gromacs zstd icelake

2 x Intel Xeon Platinum 8380 testing with a Intel M50CYP2SB2U (SE5C6200.86B.0022.D08.2103221623 BIOS) and ASPEED on Ubuntu 21.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2105150-IB-GROMACSZS30
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May 15 2021
  1 Hour, 19 Minutes
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May 15 2021
  1 Hour, 34 Minutes
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May 15 2021
  1 Hour, 15 Minutes
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May 15 2021
  28 Minutes
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gromacs zstd icelakeProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen Resolution12342 x Intel Xeon Platinum 8380 @ 3.40GHz (80 Cores / 160 Threads)Intel M50CYP2SB2U (SE5C6200.86B.0022.D08.2103221623 BIOS)Intel Device 0998504GB800GB INTEL SSDPF21Q800GBASPEEDVE2282 x Intel X710 for 10GBASE-T + 2 x Intel E810-C for QSFPUbuntu 21.045.11.0-17-generic (x86_64)GNOME Shell 3.38.4X ServerGCC 10.3.0ext41920x1080OpenBenchmarking.orgKernel Details- Transparent Huge Pages: madviseCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-gDeRY6/gcc-10-10.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-gDeRY6/gcc-10-10.3.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: intel_pstate powersave - CPU Microcode: 0xd000270Security Details- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

1234Result OverviewPhoronix Test Suite100%102%104%105%107%Zstd CompressionZstd CompressionZstd CompressionZstd CompressionZstd CompressionZstd CompressionZstd CompressionZstd CompressionZstd CompressionZstd CompressionZstd CompressionGROMACS19, Long Mode - Compression Speed8 - D.S8 - Compression Speed3, Long Mode - Compression Speed19 - Compression Speed19 - D.S8, Long Mode - D.S8, Long Mode - Compression Speed3, Long Mode - D.S3 - D.S19, Long Mode - D.SMPI CPU - water_GMX50_bare

gromacs zstd icelakecompress-zstd: 3 - Compression Speedcompress-zstd: 3 - Decompression Speedcompress-zstd: 8 - Compression Speedcompress-zstd: 8 - Decompression Speedcompress-zstd: 19 - Compression Speedcompress-zstd: 19 - Decompression Speedcompress-zstd: 3, Long Mode - Compression Speedcompress-zstd: 3, Long Mode - Decompression Speedcompress-zstd: 8, Long Mode - Compression Speedcompress-zstd: 8, Long Mode - Decompression Speedcompress-zstd: 19, Long Mode - Compression Speedcompress-zstd: 19, Long Mode - Decompression Speedgromacs: MPI CPU - water_GMX50_bare12346062.42959.52156.23025.181.52576.8264.83174.8297.03249.947.02688.99.0595982.82965.42124.13027.781.12583.0266.23149.8298.43268.444.62692.29.0195938.02987.82078.32863.981.42569.7261.73184.8298.83229.747.12716.09.0355955.62990.42094.53058.782.62615.1267.63162.1295.53250.247.82708.29.013OpenBenchmarking.org

Zstd Compression

This test measures the time needed to compress/decompress a sample file (a FreeBSD disk image - FreeBSD-12.2-RELEASE-amd64-memstick.img) using Zstd compression with options for different compression levels / settings. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 3 - Compression Speed123413002600390052006500SE +/- 52.30, N = 12SE +/- 78.29, N = 3SE +/- 50.39, N = 15SE +/- 59.41, N = 36062.45824.65938.05955.61. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 3 - Compression Speed123411002200330044005500Min: 5623.8 / Avg: 6062.42 / Max: 6365.2Min: 5668 / Avg: 5824.57 / Max: 5904.1Min: 5526.7 / Avg: 5938.01 / Max: 6228Min: 5892.1 / Avg: 5955.57 / Max: 6074.31. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 3 - Decompression Speed12346001200180024003000SE +/- 4.66, N = 3SE +/- 20.75, N = 22959.52965.42987.82990.41. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 3 - Decompression Speed12345001000150020002500Min: 2950.9 / Avg: 2959.5 / Max: 2966.9Min: 2944.6 / Avg: 2965.35 / Max: 2986.11. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 8 - Compression Speed12345001000150020002500SE +/- 23.67, N = 15SE +/- 27.19, N = 15SE +/- 18.37, N = 15SE +/- 20.14, N = 32156.22124.12078.32094.51. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 8 - Compression Speed1234400800120016002000Min: 1951.3 / Avg: 2156.21 / Max: 2311.3Min: 1964.4 / Avg: 2124.11 / Max: 2301.8Min: 1947.9 / Avg: 2078.34 / Max: 2196.4Min: 2057.2 / Avg: 2094.53 / Max: 2126.31. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 8 - Decompression Speed12347001400210028003500SE +/- 6.26, N = 12SE +/- 3.17, N = 12SE +/- 108.46, N = 12SE +/- 4.22, N = 33025.13027.72863.93058.71. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 8 - Decompression Speed12345001000150020002500Min: 2964.8 / Avg: 3025.09 / Max: 3047.4Min: 3008.7 / Avg: 3027.68 / Max: 3045.3Min: 2041 / Avg: 2863.94 / Max: 3044.6Min: 3050.5 / Avg: 3058.67 / Max: 3064.61. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 19 - Compression Speed123420406080100SE +/- 0.21, N = 3SE +/- 0.59, N = 15SE +/- 0.40, N = 3SE +/- 0.62, N = 381.581.181.482.61. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 19 - Compression Speed12341632486480Min: 81.1 / Avg: 81.5 / Max: 81.8Min: 76.1 / Avg: 81.1 / Max: 84.1Min: 80.6 / Avg: 81.4 / Max: 81.9Min: 81.7 / Avg: 82.6 / Max: 83.81. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 19 - Decompression Speed12346001200180024003000SE +/- 22.50, N = 3SE +/- 5.00, N = 15SE +/- 4.45, N = 3SE +/- 1.59, N = 32576.82583.02569.72615.11. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 19 - Decompression Speed12345001000150020002500Min: 2531.8 / Avg: 2576.77 / Max: 2600.6Min: 2533.2 / Avg: 2583.03 / Max: 2617.2Min: 2563.2 / Avg: 2569.67 / Max: 2578.2Min: 2612 / Avg: 2615.1 / Max: 2617.31. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 3, Long Mode - Compression Speed123460120180240300SE +/- 2.34, N = 8SE +/- 1.85, N = 15SE +/- 1.19, N = 3SE +/- 3.08, N = 4264.8266.2261.7267.61. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 3, Long Mode - Compression Speed123450100150200250Min: 254.5 / Avg: 264.83 / Max: 277.8Min: 259.6 / Avg: 266.15 / Max: 284.5Min: 260 / Avg: 261.7 / Max: 264Min: 263.4 / Avg: 267.6 / Max: 276.61. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 3, Long Mode - Decompression Speed12347001400210028003500SE +/- 9.55, N = 8SE +/- 29.67, N = 15SE +/- 9.16, N = 3SE +/- 19.07, N = 43174.83149.83184.83162.11. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 3, Long Mode - Decompression Speed12346001200180024003000Min: 3135.1 / Avg: 3174.84 / Max: 3214Min: 2744.6 / Avg: 3149.81 / Max: 3216.5Min: 3166.5 / Avg: 3184.77 / Max: 3195.1Min: 3109.7 / Avg: 3162.05 / Max: 3197.11. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 8, Long Mode - Compression Speed123470140210280350SE +/- 2.34, N = 3SE +/- 0.67, N = 3SE +/- 3.26, N = 4SE +/- 2.68, N = 3297.0298.4298.8295.51. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 8, Long Mode - Compression Speed123450100150200250Min: 292.4 / Avg: 297 / Max: 300Min: 297.6 / Avg: 298.37 / Max: 299.7Min: 289.8 / Avg: 298.8 / Max: 303.8Min: 290.6 / Avg: 295.53 / Max: 299.81. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 8, Long Mode - Decompression Speed12347001400210028003500SE +/- 13.28, N = 3SE +/- 5.90, N = 3SE +/- 15.78, N = 4SE +/- 6.89, N = 33249.93268.43229.73250.21. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 8, Long Mode - Decompression Speed12346001200180024003000Min: 3226.6 / Avg: 3249.87 / Max: 3272.6Min: 3259 / Avg: 3268.43 / Max: 3279.3Min: 3185.3 / Avg: 3229.65 / Max: 3254.7Min: 3236.8 / Avg: 3250.23 / Max: 3259.61. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 19, Long Mode - Compression Speed12341122334455SE +/- 0.54, N = 15SE +/- 0.44, N = 3SE +/- 0.31, N = 14SE +/- 0.19, N = 347.044.647.147.81. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 19, Long Mode - Compression Speed12341020304050Min: 40.6 / Avg: 47.03 / Max: 49.2Min: 43.8 / Avg: 44.6 / Max: 45.3Min: 44.2 / Avg: 47.11 / Max: 48.3Min: 47.6 / Avg: 47.83 / Max: 48.21. (CC) gcc options: -O3 -pthread -lz -llzma

OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 19, Long Mode - Decompression Speed12346001200180024003000SE +/- 3.70, N = 15SE +/- 8.64, N = 3SE +/- 0.90, N = 14SE +/- 2.40, N = 32688.92692.22716.02708.21. (CC) gcc options: -O3 -pthread -lz -llzma
OpenBenchmarking.orgMB/s, More Is BetterZstd Compression 1.5.0Compression Level: 19, Long Mode - Decompression Speed12345001000150020002500Min: 2654.2 / Avg: 2688.94 / Max: 2717Min: 2683 / Avg: 2692.23 / Max: 2709.5Min: 2709.5 / Avg: 2715.97 / Max: 2722.4Min: 2705.6 / Avg: 2708.2 / Max: 27131. (CC) gcc options: -O3 -pthread -lz -llzma

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This test profile allows selecting between CPU and GPU-based GROMACS builds. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2021.2Implementation: MPI CPU - Input: water_GMX50_bare12343691215SE +/- 0.029, N = 3SE +/- 0.006, N = 3SE +/- 0.014, N = 3SE +/- 0.042, N = 39.0599.0199.0359.0131. (CXX) g++ options: -O3 -pthread
OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2021.2Implementation: MPI CPU - Input: water_GMX50_bare12343691215Min: 9 / Avg: 9.06 / Max: 9.1Min: 9.01 / Avg: 9.02 / Max: 9.03Min: 9.01 / Avg: 9.04 / Max: 9.06Min: 8.94 / Avg: 9.01 / Max: 9.091. (CXX) g++ options: -O3 -pthread