GROMACS Xeon Silver

Intel Xeon Silver 4216 testing with a TYAN S7100AG2NR (V4.02 BIOS) and ASPEED on Debian 10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2102091-HA-GROMACSXE04
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February 09 2021
  27 Minutes
2
February 09 2021
  57 Minutes
3
February 09 2021
  26 Minutes
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1

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002c
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

2

3

Processor: Intel Xeon Silver 4216 @ 3.20GHz (16 Cores / 32 Threads), Motherboard: TYAN S7100AG2NR (V4.02 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 24GB, Disk: 240GB Corsair Force MP500, Graphics: ASPEED, Audio: Realtek ALC892, Network: 2 x Intel I350

OS: Debian 10, Kernel: 4.19.0-9-amd64 (x86_64), Desktop: GNOME Shell 3.30.2, Display Server: X Server, Compiler: GCC 8.3.0, File-System: ext4, Screen Resolution: 1024x768

GROMACS Xeon SilverProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen Resolution123Intel Xeon Silver 4216 @ 3.20GHz (16 Cores / 32 Threads)TYAN S7100AG2NR (V4.02 BIOS)Intel Sky Lake-E DMI3 Registers24GB240GB Corsair Force MP500ASPEEDRealtek ALC8922 x Intel I350Debian 104.19.0-9-amd64 (x86_64)GNOME Shell 3.30.2X ServerGCC 8.3.0ext41024x768OpenBenchmarking.orgCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002cSecurity Details- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

123Result OverviewPhoronix Test Suite100%102%103%105%NgspiceNgspiceGROMACSC2670C7552water_GMX50_bare

Ngspice

Ngspice is an open-source SPICE circuit simulator. Ngspice was originally based on the Berkeley SPICE electronic circuit simulator. Ngspice supports basic threading using OpenMP. This test profile is making use of the ISCAS 85 benchmark circuits. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterNgspice 34Circuit: C267012350100150200250SE +/- 0.42, N = 3SE +/- 2.77, N = 12SE +/- 2.27, N = 3213.07203.34199.651. (CC) gcc options: -O0 -fopenmp -lm -lstdc++ -lfftw3 -lXaw -lXmu -lXt -lXext -lX11 -lSM -lICE
OpenBenchmarking.orgSeconds, Fewer Is BetterNgspice 34Circuit: C26701234080120160200Min: 212.6 / Avg: 213.07 / Max: 213.9Min: 188.55 / Avg: 203.34 / Max: 216.37Min: 197.09 / Avg: 199.65 / Max: 204.181. (CC) gcc options: -O0 -fopenmp -lm -lstdc++ -lfftw3 -lXaw -lXmu -lXt -lXext -lX11 -lSM -lICE

OpenBenchmarking.orgSeconds, Fewer Is BetterNgspice 34Circuit: C75521234080120160200SE +/- 1.91, N = 3SE +/- 0.07, N = 3SE +/- 2.71, N = 3175.67166.62172.061. (CC) gcc options: -O0 -fopenmp -lm -lstdc++ -lfftw3 -lXaw -lXmu -lXt -lXext -lX11 -lSM -lICE
OpenBenchmarking.orgSeconds, Fewer Is BetterNgspice 34Circuit: C7552123306090120150Min: 171.86 / Avg: 175.67 / Max: 177.73Min: 166.55 / Avg: 166.62 / Max: 166.76Min: 169.34 / Avg: 172.06 / Max: 177.481. (CC) gcc options: -O0 -fopenmp -lm -lstdc++ -lfftw3 -lXaw -lXmu -lXt -lXext -lX11 -lSM -lICE

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2021Input: water_GMX50_bare1230.30310.60620.90931.21241.5155SE +/- 0.002, N = 3SE +/- 0.002, N = 3SE +/- 0.001, N = 31.3371.3471.3451. (CXX) g++ options: -O3 -pthread
OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2021Input: water_GMX50_bare123246810Min: 1.33 / Avg: 1.34 / Max: 1.34Min: 1.34 / Avg: 1.35 / Max: 1.35Min: 1.34 / Avg: 1.35 / Max: 1.351. (CXX) g++ options: -O3 -pthread

1

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002c
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Testing initiated at 9 February 2021 12:45 by user phoronix.

2

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002c
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Testing initiated at 9 February 2021 13:16 by user phoronix.

3

Processor: Intel Xeon Silver 4216 @ 3.20GHz (16 Cores / 32 Threads), Motherboard: TYAN S7100AG2NR (V4.02 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 24GB, Disk: 240GB Corsair Force MP500, Graphics: ASPEED, Audio: Realtek ALC892, Network: 2 x Intel I350

OS: Debian 10, Kernel: 4.19.0-9-amd64 (x86_64), Desktop: GNOME Shell 3.30.2, Display Server: X Server, Compiler: GCC 8.3.0, File-System: ext4, Screen Resolution: 1024x768

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002c
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Testing initiated at 9 February 2021 14:22 by user phoronix.