20210117 bioinformatics

AMD Ryzen 7 3700X 8-Core testing with a ASRock X570 Phantom Gaming-ITX/TB3 (P2.80 BIOS) and Zotac NVIDIA GeForce RTX 2060 SUPER 8GB on Ubuntu 20.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2101188-HA-20210117B63
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  Duration
AMD Ryzen 7 3700X 8-Core
January 17 2021
  39 Minutes
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20210117 bioinformatics - Phoronix Test Suite

20210117 bioinformatics

AMD Ryzen 7 3700X 8-Core testing with a ASRock X570 Phantom Gaming-ITX/TB3 (P2.80 BIOS) and Zotac NVIDIA GeForce RTX 2060 SUPER 8GB on Ubuntu 20.10 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2101188-HA-20210117B63&grs.

20210117 bioinformaticsProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDisplay ServerDisplay DriverOpenCLVulkanCompilerFile-SystemScreen ResolutionAMD Ryzen 7 3700X 8-CoreAMD Ryzen 7 3700X 8-Core @ 3.60GHz (8 Cores / 16 Threads)ASRock X570 Phantom Gaming-ITX/TB3 (P2.80 BIOS)AMD Starship/Matisse32GB500GB Western Digital WDS500G3X0C-00SJG0 + 4 x 2000GB Seagate ST2000LM015-2E81Zotac NVIDIA GeForce RTX 2060 SUPER 8GBNVIDIA TU106 HD AudioIntel I211 + Intel Wi-Fi 6 AX200Ubuntu 20.105.8.0-38-lowlatency (x86_64)X Server 1.20.9modesetting 1.20.9OpenCL 1.2 CUDA 11.2.1091.2.155GCC 10.2.0 + CUDA 11.0btrfs640x480OpenBenchmarking.org- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq performance (Boost: Enabled) - CPU Microcode: 0x8701021- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

20210117 bioinformaticshimeno: Poisson Pressure Solvermafft: Multiple Sequence Alignment - LSU RNAhmmer: Pfam Database Searchqmcpack: mrbayes: Primate Phylogeny AnalysisAMD Ryzen 7 3700X 8-Core4911.10588810.36292.883580.4183.327OpenBenchmarking.org

Himeno Benchmark

Poisson Pressure Solver

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverAMD Ryzen 7 3700X 8-Core11002200330044005500SE +/- 62.25, N = 34911.111. (CC) gcc options: -O3 -mavx2

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAAMD Ryzen 7 3700X 8-Core3691215SE +/- 0.06, N = 310.361. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database SearchAMD Ryzen 7 3700X 8-Core20406080100SE +/- 0.15, N = 392.881. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm

QMCPACK

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8AMD Ryzen 7 3700X 8-Core130260390520650580.411. (CXX) g++ options: -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O3 -ffast-math -lm

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny AnalysisAMD Ryzen 7 3700X 8-Core20406080100SE +/- 2.47, N = 1586.421. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4a -msha -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm

Phoronix Test Suite v10.8.4