gromacs mafft couchdb

AMD Ryzen 3 3200U testing with a MOTILE PF4PU1F (N.1.03 BIOS) and AMD Picasso 512MB on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2009268-FI-GROMACSMA68
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1
September 26 2020
  1 Hour, 16 Minutes
2
September 26 2020
  1 Hour, 17 Minutes
3
September 26 2020
  1 Hour, 39 Minutes
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  1 Hour, 24 Minutes

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1

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8108102
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

2

3

Processor: AMD Ryzen 3 3200U @ 2.60GHz (2 Cores / 4 Threads), Motherboard: MOTILE PF4PU1F (N.1.03 BIOS), Chipset: AMD Raven/Raven2, Memory: 3584MB, Disk: 128GB BIWIN SSD, Graphics: AMD Picasso 512MB (1200/1200MHz), Audio: AMD Raven/Raven2/Fenghuang, Network: Realtek RTL8111/8168/8411 + Intel Dual Band-AC 3168NGW

OS: Ubuntu 20.04, Kernel: 5.4.0-48-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, Display Driver: amdgpu 19.1.0, OpenGL: 4.6 Mesa 20.0.4 (LLVM 9.0.1), Compiler: GCC 9.3.0, File-System: ext4, Screen Resolution: 1920x1080

gromacs mafft couchdbProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen Resolution123AMD Ryzen 3 3200U @ 2.60GHz (2 Cores / 4 Threads)MOTILE PF4PU1F (N.1.03 BIOS)AMD Raven/Raven23584MB128GB BIWIN SSDAMD Picasso 512MB (1200/1200MHz)AMD Raven/Raven2/FenghuangRealtek RTL8111/8168/8411 + Intel Dual Band-AC 3168NGWUbuntu 20.045.4.0-48-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.8amdgpu 19.1.04.6 Mesa 20.0.4 (LLVM 9.0.1)GCC 9.3.0ext41920x1080OpenBenchmarking.orgCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8108102Security Details- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Apache CouchDB

OpenBenchmarking.orgSeconds, Fewer Is BetterApache CouchDB 3.1.1Bulk Size: 100 - Inserts: 1000 - Rounds: 2412370140210280350SE +/- 2.66, N = 3SE +/- 1.67, N = 3SE +/- 0.62, N = 3300.09320.27316.361. (CXX) g++ options: -std=c++14 -lmozjs-68 -lm -lerl_interface -lei -fPIC -MMD
OpenBenchmarking.orgSeconds, Fewer Is BetterApache CouchDB 3.1.1Bulk Size: 100 - Inserts: 1000 - Rounds: 2412360120180240300Min: 294.99 / Avg: 300.08 / Max: 303.98Min: 317.69 / Avg: 320.27 / Max: 323.4Min: 315.74 / Avg: 316.36 / Max: 317.611. (CXX) g++ options: -std=c++14 -lmozjs-68 -lm -lerl_interface -lei -fPIC -MMD

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.3Water Benchmark1230.03260.06520.09780.13040.163SE +/- 0.001, N = 3SE +/- 0.000, N = 3SE +/- 0.002, N = 40.1450.1440.1411. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm
OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.3Water Benchmark12312345Min: 0.14 / Avg: 0.15 / Max: 0.15Min: 0.14 / Avg: 0.14 / Max: 0.14Min: 0.14 / Avg: 0.14 / Max: 0.141. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm

1

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8108102
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 26 September 2020 16:39 by user phoronix.

2

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8108102
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 26 September 2020 17:57 by user phoronix.

3

Processor: AMD Ryzen 3 3200U @ 2.60GHz (2 Cores / 4 Threads), Motherboard: MOTILE PF4PU1F (N.1.03 BIOS), Chipset: AMD Raven/Raven2, Memory: 3584MB, Disk: 128GB BIWIN SSD, Graphics: AMD Picasso 512MB (1200/1200MHz), Audio: AMD Raven/Raven2/Fenghuang, Network: Realtek RTL8111/8168/8411 + Intel Dual Band-AC 3168NGW

OS: Ubuntu 20.04, Kernel: 5.4.0-48-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, Display Driver: amdgpu 19.1.0, OpenGL: 4.6 Mesa 20.0.4 (LLVM 9.0.1), Compiler: GCC 9.3.0, File-System: ext4, Screen Resolution: 1920x1080

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8108102
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 26 September 2020 19:57 by user phoronix.