gromacs + mafft update
AMD Ryzen 7 1700 Eight-Core testing with a MSI B350 TOMAHAWK (MS-7A34) v1.0 (1.H0 BIOS) and AMD Radeon RX 470/480/570/570X/580/580X/590 8GB on Ubuntu 19.10 via the Phoronix Test Suite.
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Processor: AMD Ryzen 7 1700 Eight-Core @ 3.00GHz (8 Cores / 16 Threads), Motherboard: MSI B350 TOMAHAWK (MS-7A34) v1.0 (1.H0 BIOS), Chipset: AMD 17h, Memory: 16GB, Disk: 120GB Samsung SSD 840, Graphics: AMD Radeon RX 470/480/570/570X/580/580X/590 8GB (1266/2000MHz), Audio: AMD Ellesmere HDMI Audio, Monitor: VA2431, Network: Realtek RTL8111/8168/8411
OS: Ubuntu 19.10, Kernel: 5.9.0-050900rc2-generic (x86_64) 20200823, Desktop: GNOME Shell 3.34.1, Display Server: X Server 1.20.5, Display Driver: amdgpu 19.0.1, OpenGL: 4.5 Mesa 19.2.8 (LLVM 9.0.0), Vulkan: 1.1.107, Compiler: GCC 9.2.1 20191008, File-System: ext4, Screen Resolution: 1920x1080
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8001137
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected
GROMACS
The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.
Timed MAFFT Alignment
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Processor: AMD Ryzen 7 1700 Eight-Core @ 3.00GHz (8 Cores / 16 Threads), Motherboard: MSI B350 TOMAHAWK (MS-7A34) v1.0 (1.H0 BIOS), Chipset: AMD 17h, Memory: 16GB, Disk: 120GB Samsung SSD 840, Graphics: AMD Radeon RX 470/480/570/570X/580/580X/590 8GB (1266/2000MHz), Audio: AMD Ellesmere HDMI Audio, Monitor: VA2431, Network: Realtek RTL8111/8168/8411
OS: Ubuntu 19.10, Kernel: 5.9.0-050900rc2-generic (x86_64) 20200823, Desktop: GNOME Shell 3.34.1, Display Server: X Server 1.20.5, Display Driver: amdgpu 19.0.1, OpenGL: 4.5 Mesa 19.2.8 (LLVM 9.0.0), Vulkan: 1.1.107, Compiler: GCC 9.2.1 20191008, File-System: ext4, Screen Resolution: 1920x1080
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8001137
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected
Testing initiated at 26 September 2020 15:28 by user phoronix.