NAMD CUDA Run

AMD Ryzen 9 3950X 16-Core testing with a ASUS ROG CROSSHAIR VIII HERO (WI-FI) (1302 BIOS) and NVIDIA TITAN RTX 24GB on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2009066-PTS-NAMDCUDA39
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Result
Identifier
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Performance Per
Dollar
Date
Run
  Test
  Duration
AMD Ryzen 9 3950X 16-Core
September 06 2020
  1 Minute


NAMD CUDA RunOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 9 3950X 16-Core @ 3.50GHz (16 Cores / 32 Threads)ASUS ROG CROSSHAIR VIII HERO (WI-FI) (1302 BIOS)AMD Starship/Matisse16GB2000GB Corsair Force MP600NVIDIA TITAN RTX 24GB (1350/7000MHz)NVIDIA TU102 HD AudioDELL P2415QRealtek RTL8125 2.5GbE + Intel I211 + Intel Wi-Fi 6 AX200Ubuntu 20.045.4.0-45-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.8NVIDIA 450.664.6.0OpenCL 1.2 CUDA 11.0.2281.2.133GCC 9.3.0 + CUDA 11.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLOpenCLVulkanCompilerFile-SystemScreen ResolutionNAMD CUDA Run BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq performance - CPU Microcode: 0x8701013- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD CUDA

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. This version of the NAMD test profile uses CUDA GPU acceleration. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD CUDA 2.14ATPase Simulation - 327,506 AtomsAMD Ryzen 9 3950X 16-Core0.04020.08040.12060.16080.201SE +/- 0.00034, N = 30.17884