namd 214

AMD Ryzen Threadripper 3990X 64-Core testing with a System76 Thelio Major (F4c Z5 BIOS) and AMD Radeon RX 5600 OEM/5600 XT / 5700/5700 8GB on Pop 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2008280-FI-NAMD2141077
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Result
Identifier
View Logs
Performance Per
Dollar
Date
Run
  Test
  Duration
AMD Ryzen Threadripper 3990X 64-Core
August 28 2020
  2 Minutes


namd 214OpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 3990X 64-Core @ 2.90GHz (64 Cores / 128 Threads)System76 Thelio Major (F4c Z5 BIOS)AMD Starship/Matisse126GBSamsung SSD 970 EVO Plus 500GBAMD Radeon RX 5600 OEM/5600 XT / 5700/5700 8GB (1750/875MHz)AMD Navi 10 HDMI AudioG237HLIntel I211 + Intel Wi-Fi 6 AX200Pop 20.045.4.0-7634-generic (x86_64)GNOME Shell 3.36.3X Server 1.20.8amdgpu 19.1.04.6 Mesa 20.0.8 (LLVM 10.0.0)GCC 9.3.0ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionNamd 214 BenchmarksSystem Logs- snd_usb_audio.ignore_ctl_error=1- Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsAMD Ryzen Threadripper 3990X 64-Core0.09170.18340.27510.36680.4585SE +/- 0.00160, N = 30.40772