NAMD 2.14 + More On Ryzen 9 3950X

AMD Ryzen 9 3950X 16-Core testing with a ASUS ROG CROSSHAIR VIII HERO (WI-FI) (1302 BIOS) and AMD Radeon RX 5600 OEM/5600 XT / 5700/5700 8GB on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2008203-PTS-NAMD214M08
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Run 1
August 20 2020
  25 Minutes
Run 2
August 20 2020
  16 Minutes
Run 3
August 20 2020
  16 Minutes
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Run 1

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8701013
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected

Run 2

Run 3

Processor: AMD Ryzen 9 3950X 16-Core @ 3.50GHz (16 Cores / 32 Threads), Motherboard: ASUS ROG CROSSHAIR VIII HERO (WI-FI) (1302 BIOS), Chipset: AMD Starship/Matisse, Memory: 16GB, Disk: 2000GB Corsair Force MP600, Graphics: AMD Radeon RX 5600 OEM/5600 XT / 5700/5700 8GB (2060/875MHz), Audio: AMD Navi 10 HDMI Audio, Monitor: DELL P2415Q, Network: Realtek RTL8125 2.5GbE + Intel I211 + Intel Wi-Fi 6 AX200

OS: Ubuntu 20.04, Kernel: 5.6.11-050611-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, OpenGL: 4.6 Mesa 20.2.0-devel (git-45c3331 2020-05-09 focal-oibaf-ppa) (LLVM 9.0.1), Vulkan: 1.2.128, Compiler: GCC 9.3.0, File-System: ext4, Screen Resolution: 3840x2160

NAMD 2.14 + More On Ryzen 9 3950XOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 9 3950X 16-Core @ 3.50GHz (16 Cores / 32 Threads)ASUS ROG CROSSHAIR VIII HERO (WI-FI) (1302 BIOS)AMD Starship/Matisse16GB2000GB Corsair Force MP600AMD Radeon RX 5600 OEM/5600 XT / 5700/5700 8GB (2060/875MHz)AMD Navi 10 HDMI AudioDELL P2415QRealtek RTL8125 2.5GbE + Intel I211 + Intel Wi-Fi 6 AX200Ubuntu 20.045.6.11-050611-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.84.6 Mesa 20.2.0-devel (git-45c3331 2020-05-09 focal-oibaf-ppa) (LLVM 9.0.1)1.2.128GCC 9.3.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLVulkanCompilerFile-SystemScreen ResolutionNAMD 2.14 + More On Ryzen 9 3950X BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8701013- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected

Run 1Run 2Run 3Result OverviewPhoronix Test Suite100%102%104%106%108%NAMDGROMACSASTC EncoderATPase Simulation - 327,506 AtomsWater BenchmarkExhaustive

NAMD

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsRun 1Run 2Run 30.26610.53220.79831.06441.3305SE +/- 0.07601, N = 12SE +/- 0.00359, N = 3SE +/- 0.00369, N = 31.182501.093361.09468
OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsRun 1Run 2Run 3246810Min: 1.08 / Avg: 1.18 / Max: 2.01Min: 1.09 / Avg: 1.09 / Max: 1.1Min: 1.09 / Avg: 1.09 / Max: 1.1

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.1Water BenchmarkRun 1Run 2Run 30.28040.56080.84121.12161.402SE +/- 0.001, N = 3SE +/- 0.001, N = 3SE +/- 0.003, N = 31.2461.2371.2371. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm
OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.1Water BenchmarkRun 1Run 2Run 3246810Min: 1.24 / Avg: 1.25 / Max: 1.25Min: 1.24 / Avg: 1.24 / Max: 1.24Min: 1.23 / Avg: 1.24 / Max: 1.241. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm

ASTC Encoder

OpenBenchmarking.orgSeconds, Fewer Is BetterASTC Encoder 2.0Preset: ExhaustiveRun 1Run 2Run 320406080100SE +/- 0.03, N = 3SE +/- 0.04, N = 3SE +/- 0.02, N = 3105.18105.16105.191. (CXX) g++ options: -std=c++14 -fvisibility=hidden -O3 -flto -mfpmath=sse -mavx2 -mpopcnt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterASTC Encoder 2.0Preset: ExhaustiveRun 1Run 2Run 320406080100Min: 105.13 / Avg: 105.18 / Max: 105.21Min: 105.08 / Avg: 105.16 / Max: 105.21Min: 105.15 / Avg: 105.19 / Max: 105.231. (CXX) g++ options: -std=c++14 -fvisibility=hidden -O3 -flto -mfpmath=sse -mavx2 -mpopcnt -lpthread

Run 1

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8701013
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected

Testing initiated at 20 August 2020 10:42 by user pts.

Run 2

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8701013
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected

Testing initiated at 20 August 2020 11:15 by user pts.

Run 3

Processor: AMD Ryzen 9 3950X 16-Core @ 3.50GHz (16 Cores / 32 Threads), Motherboard: ASUS ROG CROSSHAIR VIII HERO (WI-FI) (1302 BIOS), Chipset: AMD Starship/Matisse, Memory: 16GB, Disk: 2000GB Corsair Force MP600, Graphics: AMD Radeon RX 5600 OEM/5600 XT / 5700/5700 8GB (2060/875MHz), Audio: AMD Navi 10 HDMI Audio, Monitor: DELL P2415Q, Network: Realtek RTL8125 2.5GbE + Intel I211 + Intel Wi-Fi 6 AX200

OS: Ubuntu 20.04, Kernel: 5.6.11-050611-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, OpenGL: 4.6 Mesa 20.2.0-devel (git-45c3331 2020-05-09 focal-oibaf-ppa) (LLVM 9.0.1), Vulkan: 1.2.128, Compiler: GCC 9.3.0, File-System: ext4, Screen Resolution: 3840x2160

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8701013
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected

Testing initiated at 20 August 2020 11:32 by user pts.