jhamby-lenovo-i5-wsl2-scicomp

microsoft testing on Ubuntu 20.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2005114-JHAM-JHAMBYL25.

jhamby-lenovo-i5-wsl2-scicompProcessorMemoryDiskOSKernelCompilerFile-SystemSystem Layerjhamby-lenovo-i5-wsl2-scicompIntel Core i5-9400F (6 Cores)26GB2 x 275GB Virtual DiskUbuntu 20.044.19.104-microsoft-standard (x86_64)GCC 9.3.0ext4microsoftOpenBenchmarking.org- CXXFLAGS="-O3 -pipe -march=native" CFLAGS="-O3 -pipe -march=native" FFLAGS="-O3 -pipe -march=native" - --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0xffffffff- itlb_multihit: KVM: Vulnerable + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Not affected

jhamby-lenovo-i5-wsl2-scicompcp2k: Fayalite-FIST Datanamd: ATPase Simulation - 327,506 Atomsneat: amg: ffte: N=256, 1D Complex FFT Routinefftw: Stock - 1D FFT Size 32fftw: Stock - 2D FFT Size 32fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 32fftw: Float + SSE - 2D FFT Size 32fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 4096mrbayes: Primate Phylogeny Analysisqmcpack: hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentlammps: Rhodopsin Proteinarrayfire: BLAS CPUmt-dgemm: Sustained Floating-Point Ratehimeno: Poisson Pressure Solverrbenchmark: gromacs: Water Benchmarkjhamby-lenovo-i5-wsl2-scicomp838.5712.9905231.677106548.848414.0512928138019190.16308.01548843180477931944196.137254.794.5744.1294.571623.8040.5964883689.4266710.65720.674OpenBenchmarking.org

CP2K Molecular Dynamics

Fayalite-FIST Data

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 6.1Fayalite-FIST Datajhamby-lenovo-i5-wsl2-scicomp2004006008001000838.57

NAMD

ATPase Simulation - 327,506 Atoms

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atomsjhamby-lenovo-i5-wsl2-scicomp0.67291.34582.01872.69163.3645SE +/- 0.01337, N = 32.99052

Nebular Empirical Analysis Tool

OpenBenchmarking.orgSeconds, Fewer Is BetterNebular Empirical Analysis Tool 2020-02-29jhamby-lenovo-i5-wsl2-scicomp714212835SE +/- 0.37, N = 1331.681. (F9X) gfortran options: -O3 -pipe -march=native -cpp -ffree-line-length-0 -Jsource/ -fopenmp -fno-backtrace

Algebraic Multi-Grid Benchmark

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmarkjhamby-lenovo-i5-wsl2-scicomp20K40K60K80K100KSE +/- 949.82, N = 15106548.841. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

FFTE

Test: N=256, 1D Complex FFT Routine

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 6.0Test: N=256, 1D Complex FFT Routinejhamby-lenovo-i5-wsl2-scicomp2K4K6K8K10KSE +/- 37.04, N = 38414.051. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

FFTW

Build: Stock - Size: 1D FFT Size 32

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 32jhamby-lenovo-i5-wsl2-scicomp3K6K9K12K15KSE +/- 38.92, N = 3129281. (CC) gcc options: -pthread -O3 -pipe -march=native -lm

FFTW

Build: Stock - Size: 2D FFT Size 32

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 32jhamby-lenovo-i5-wsl2-scicomp3K6K9K12K15KSE +/- 101.76, N = 3138011. (CC) gcc options: -pthread -O3 -pipe -march=native -lm

FFTW

Build: Stock - Size: 1D FFT Size 4096

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096jhamby-lenovo-i5-wsl2-scicomp2K4K6K8K10KSE +/- 50.35, N = 39190.11. (CC) gcc options: -pthread -O3 -pipe -march=native -lm

FFTW

Build: Stock - Size: 2D FFT Size 4096

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 4096jhamby-lenovo-i5-wsl2-scicomp14002800420056007000SE +/- 24.13, N = 36308.01. (CC) gcc options: -pthread -O3 -pipe -march=native -lm

FFTW

Build: Float + SSE - Size: 1D FFT Size 32

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 32jhamby-lenovo-i5-wsl2-scicomp3K6K9K12K15KSE +/- 37.09, N = 3154881. (CC) gcc options: -pthread -O3 -pipe -march=native -lm

FFTW

Build: Float + SSE - Size: 2D FFT Size 32

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 32jhamby-lenovo-i5-wsl2-scicomp9K18K27K36K45KSE +/- 475.42, N = 15431801. (CC) gcc options: -pthread -O3 -pipe -march=native -lm

FFTW

Build: Float + SSE - Size: 1D FFT Size 4096

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096jhamby-lenovo-i5-wsl2-scicomp10K20K30K40K50KSE +/- 86.63, N = 3477931. (CC) gcc options: -pthread -O3 -pipe -march=native -lm

FFTW

Build: Float + SSE - Size: 2D FFT Size 4096

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 4096jhamby-lenovo-i5-wsl2-scicomp4K8K12K16K20KSE +/- 106.35, N = 3194411. (CC) gcc options: -pthread -O3 -pipe -march=native -lm

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisjhamby-lenovo-i5-wsl2-scicomp20406080100SE +/- 0.76, N = 396.141. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -pipe -march=native -lm -lreadline

QMCPACK

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8jhamby-lenovo-i5-wsl2-scicomp60120180240300254.791. (CXX) g++ options: -O3 -pipe -march=native -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -lm

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchjhamby-lenovo-i5-wsl2-scicomp1.02922.05843.08764.11685.146SE +/- 0.188, N = 154.5741. (CC) gcc options: -O3 -pipe -march=native -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentjhamby-lenovo-i5-wsl2-scicomp0.9291.8582.7873.7164.645SE +/- 0.062, N = 154.1291. (CC) gcc options: -std=c99 -O3 -lm -lpthread

LAMMPS Molecular Dynamics Simulator

Model: Rhodopsin Protein

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 9Jan2020Model: Rhodopsin Proteinjhamby-lenovo-i5-wsl2-scicomp1.02852.0573.08554.1145.1425SE +/- 0.048, N = 84.5711. (CXX) g++ options: -O3 -pipe -march=native -rdynamic -ljpeg -lpng -lz -lfftw3 -lm

ArrayFire

Test: BLAS CPU

OpenBenchmarking.orgGFLOPS, More Is BetterArrayFire 3.7Test: BLAS CPUjhamby-lenovo-i5-wsl2-scicomp130260390520650SE +/- 1.47, N = 3623.801. (CXX) g++ options: -O3 -pipe -march=native -rdynamic

ACES DGEMM

Sustained Floating-Point Rate

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Ratejhamby-lenovo-i5-wsl2-scicomp0.13420.26840.40260.53680.671SE +/- 0.002988, N = 30.5964881. (CC) gcc options: -O3 -march=native -fopenmp -pipe

Himeno Benchmark

Poisson Pressure Solver

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverjhamby-lenovo-i5-wsl2-scicomp8001600240032004000SE +/- 6.45, N = 33689.431. (CC) gcc options: -O3 -pipe -march=native -mavx2

R Benchmark

OpenBenchmarking.orgSeconds, Fewer Is BetterR Benchmarkjhamby-lenovo-i5-wsl2-scicomp0.14790.29580.44370.59160.7395SE +/- 0.0014, N = 30.65721. R scripting front-end version 4.0.0 (2020-04-24)

GROMACS

Water Benchmark

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.1Water Benchmarkjhamby-lenovo-i5-wsl2-scicomp0.15170.30340.45510.60680.7585SE +/- 0.003, N = 30.6741. (CXX) g++ options: -O3 -pipe -march=native -pthread -lrt -lpthread -lm

Phoronix Test Suite v10.8.4