GROMACS + NAMD Threadripper 3970X
AMD Ryzen Threadripper 3970X 32-Core testing with a ASUS ROG ZENITH II EXTREME (0702 BIOS) and llvmpipe 63GB on Ubuntu 19.10 via the Phoronix Test Suite.
Threadripper 3970X
Processor: AMD Ryzen Threadripper 3970X 32-Core @ 3.70GHz (32 Cores / 64 Threads), Motherboard: ASUS ROG ZENITH II EXTREME (0702 BIOS), Chipset: AMD Starship/Matisse, Memory: 64GB, Disk: 1000GB Force MP600, Graphics: llvmpipe 63GB, Audio: AMD Navi 10 HDMI Audio, Network: Aquantia AQC107 NBase-T/IEEE + Intel I211 + Intel Wi-Fi 6 AX200
OS: Ubuntu 19.10, Kernel: 5.3.0-40-generic (x86_64), Desktop: GNOME Shell 3.34.1, Display Server: X Server 1.20.5, Display Driver: modesetting 1.20.5, OpenGL: 3.3 Mesa 19.2.8 (LLVM 9.0 128 bits), Compiler: GCC 9.2.1 20191008 + Clang 9.0.0-2, File-System: ext4, Screen Resolution: 3840x2160
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected
NAMD
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.
GROMACS
The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.
Threadripper 3970X
Processor: AMD Ryzen Threadripper 3970X 32-Core @ 3.70GHz (32 Cores / 64 Threads), Motherboard: ASUS ROG ZENITH II EXTREME (0702 BIOS), Chipset: AMD Starship/Matisse, Memory: 64GB, Disk: 1000GB Force MP600, Graphics: llvmpipe 63GB, Audio: AMD Navi 10 HDMI Audio, Network: Aquantia AQC107 NBase-T/IEEE + Intel I211 + Intel Wi-Fi 6 AX200
OS: Ubuntu 19.10, Kernel: 5.3.0-40-generic (x86_64), Desktop: GNOME Shell 3.34.1, Display Server: X Server 1.20.5, Display Driver: modesetting 1.20.5, OpenGL: 3.3 Mesa 19.2.8 (LLVM 9.0 128 bits), Compiler: GCC 9.2.1 20191008 + Clang 9.0.0-2, File-System: ext4, Screen Resolution: 3840x2160
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected
Testing initiated at 2 March 2020 11:43 by user pts.