2014ubuntu14.04genericBIO

Running pts/hmmer-1.1.0, pts/mafft-1.4.0, pts/mrbayes-1.2.0 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1410283-SO-1410285KH32.

2014ubuntu14.04genericBIOProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen Resolution2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIOIntel Core i3-2125 @ 3.30GHz (4 Cores)MSI H67MA-E45 (MS-7678) v1.0Intel 2nd Generation Core Family DRAM24576MB80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0Intel HD 3000 (1100MHz)C-Media CMI8788Realtek RTL8111/8168/8411Ubuntu 14.043.13.0-37-generic (x86_64)GNOME Shell 3.12.2X Server 1.15.1intel 2.99.9103.1 Mesa 10.1.3GCC 4.8.2ext41920x12003.13.0-37-lowlatency (x86_64)Intel Core i5-3320M @ 2.60GHz (4 Cores)LENOVO 23501B6Intel 3rd Gen Core DRAM8192MB240GB Crucial_CT240M50Intel HD 4000 (1200MHz)Realtek ALC3202Intel 82579LM Gigabit Connection + Intel Centrino Advanced-N 62053.13.0-37-generic (x86_64)GNOME 3.9.903.3 Mesa 10.1.3GCC 4.8OpenBenchmarking.orgCompiler Details- 2014ubuntu14.04genericBIO: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - 2014ubuntu14.04lowlatencyBIO: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - 2014ubuntuocdc14.04generic_ivyBIO: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v Processor Details- Scaling Governor: acpi-cpufreq ondemand

2014ubuntu14.04genericBIOhmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysis2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO22.7211.6126.4923.0611.7626.1027.8313.4133.51OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO714212835SE +/- 0.01, N = 3SE +/- 0.06, N = 3SE +/- 0.49, N = 622.7223.0627.831. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO3691215SE +/- 0.30, N = 6SE +/- 0.05, N = 3SE +/- 0.31, N = 611.6111.7613.411. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO816243240SE +/- 0.02, N = 3SE +/- 0.03, N = 3SE +/- 0.15, N = 326.4926.1033.51

Phoronix Test Suite v10.8.4