2014ubuntu14.04genericBIO

Running pts/hmmer-1.1.0, pts/mafft-1.4.0, pts/mrbayes-1.2.0 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1410283-SO-1410285KH32
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Bioinformatics 3 Tests
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2014ubuntu14.04genericBIO
October 28 2014
 
2014ubuntu14.04lowlatencyBIO
October 28 2014
 
2014ubuntuocdc14.04generic_ivyBIO
October 28 2014
 
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2014ubuntu14.04genericBIO

Processor: Intel Core i3-2125 @ 3.30GHz (4 Cores), Motherboard: MSI H67MA-E45 (MS-7678) v1.0, Chipset: Intel 2nd Generation Core Family DRAM, Memory: 24576MB, Disk: 80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0, Graphics: Intel HD 3000 (1100MHz), Audio: C-Media CMI8788, Network: Realtek RTL8111/8168/8411

OS: Ubuntu 14.04, Kernel: 3.13.0-37-generic (x86_64), Desktop: GNOME Shell 3.12.2, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.1 Mesa 10.1.3, Compiler: GCC 4.8.2, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

2014ubuntu14.04lowlatencyBIO

OS: Ubuntu 14.04, Kernel: 3.13.0-37-lowlatency (x86_64), Desktop: GNOME Shell 3.12.2, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.1 Mesa 10.1.3, Compiler: GCC 4.8.2, File-System: ext4, Screen Resolution: 1920x1200

2014ubuntuocdc14.04generic_ivyBIO

Processor: Intel Core i5-3320M @ 2.60GHz (4 Cores), Motherboard: LENOVO 23501B6, Chipset: Intel 3rd Gen Core DRAM, Memory: 8192MB, Disk: 240GB Crucial_CT240M50, Graphics: Intel HD 4000 (1200MHz), Audio: Realtek ALC3202, Network: Intel 82579LM Gigabit Connection + Intel Centrino Advanced-N 6205

OS: Ubuntu 14.04, Kernel: 3.13.0-37-generic (x86_64), Desktop: GNOME 3.9.90, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.3 Mesa 10.1.3, Compiler: GCC 4.8, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

2014ubuntu14.04genericBIOProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen Resolution2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIOIntel Core i3-2125 @ 3.30GHz (4 Cores)MSI H67MA-E45 (MS-7678) v1.0Intel 2nd Generation Core Family DRAM24576MB80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0Intel HD 3000 (1100MHz)C-Media CMI8788Realtek RTL8111/8168/8411Ubuntu 14.043.13.0-37-generic (x86_64)GNOME Shell 3.12.2X Server 1.15.1intel 2.99.9103.1 Mesa 10.1.3GCC 4.8.2ext41920x12003.13.0-37-lowlatency (x86_64)Intel Core i5-3320M @ 2.60GHz (4 Cores)LENOVO 23501B6Intel 3rd Gen Core DRAM8192MB240GB Crucial_CT240M50Intel HD 4000 (1200MHz)Realtek ALC3202Intel 82579LM Gigabit Connection + Intel Centrino Advanced-N 62053.13.0-37-generic (x86_64)GNOME 3.9.903.3 Mesa 10.1.3GCC 4.8OpenBenchmarking.orgCompiler Details- 2014ubuntu14.04genericBIO: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - 2014ubuntu14.04lowlatencyBIO: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - 2014ubuntuocdc14.04generic_ivyBIO: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v Processor Details- Scaling Governor: acpi-cpufreq ondemand

2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIOResult OverviewPhoronix Test Suite100%107%114%121%128%Timed MrBayes AnalysisTimed HMMer SearchTimed MAFFT AlignmentP.P.AP.D.SM.S.A

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO714212835SE +/- 0.01, N = 3SE +/- 0.06, N = 3SE +/- 0.49, N = 622.7223.0627.831. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO612182430Min: 22.7 / Avg: 22.72 / Max: 22.74Min: 22.95 / Avg: 23.06 / Max: 23.16Min: 25.5 / Avg: 27.83 / Max: 28.881. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO3691215SE +/- 0.30, N = 6SE +/- 0.05, N = 3SE +/- 0.31, N = 611.6111.7613.411. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO48121620Min: 10.68 / Avg: 11.61 / Max: 12.61Min: 11.66 / Avg: 11.76 / Max: 11.81Min: 12.81 / Avg: 13.41 / Max: 14.781. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO816243240SE +/- 0.02, N = 3SE +/- 0.03, N = 3SE +/- 0.15, N = 326.4926.1033.51
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO2014ubuntuocdc14.04generic_ivyBIO714212835Min: 26.45 / Avg: 26.49 / Max: 26.52Min: 26.06 / Avg: 26.1 / Max: 26.16Min: 33.27 / Avg: 33.51 / Max: 33.79

2014ubuntu14.04genericBIO

Processor: Intel Core i3-2125 @ 3.30GHz (4 Cores), Motherboard: MSI H67MA-E45 (MS-7678) v1.0, Chipset: Intel 2nd Generation Core Family DRAM, Memory: 24576MB, Disk: 80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0, Graphics: Intel HD 3000 (1100MHz), Audio: C-Media CMI8788, Network: Realtek RTL8111/8168/8411

OS: Ubuntu 14.04, Kernel: 3.13.0-37-generic (x86_64), Desktop: GNOME Shell 3.12.2, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.1 Mesa 10.1.3, Compiler: GCC 4.8.2, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

Testing initiated at 28 October 2014 11:13 by user koschi.

2014ubuntu14.04lowlatencyBIO

Processor: Intel Core i3-2125 @ 3.30GHz (4 Cores), Motherboard: MSI H67MA-E45 (MS-7678) v1.0, Chipset: Intel 2nd Generation Core Family DRAM, Memory: 24576MB, Disk: 80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0, Graphics: Intel HD 3000 (1100MHz), Audio: C-Media CMI8788, Network: Realtek RTL8111/8168/8411

OS: Ubuntu 14.04, Kernel: 3.13.0-37-lowlatency (x86_64), Desktop: GNOME Shell 3.12.2, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.1 Mesa 10.1.3, Compiler: GCC 4.8.2, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

Testing initiated at 28 October 2014 11:25 by user koschi.

2014ubuntuocdc14.04generic_ivyBIO

Processor: Intel Core i5-3320M @ 2.60GHz (4 Cores), Motherboard: LENOVO 23501B6, Chipset: Intel 3rd Gen Core DRAM, Memory: 8192MB, Disk: 240GB Crucial_CT240M50, Graphics: Intel HD 4000 (1200MHz), Audio: Realtek ALC3202, Network: Intel 82579LM Gigabit Connection + Intel Centrino Advanced-N 6205

OS: Ubuntu 14.04, Kernel: 3.13.0-37-generic (x86_64), Desktop: GNOME 3.9.90, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.3 Mesa 10.1.3, Compiler: GCC 4.8, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

Testing initiated at 28 October 2014 11:39 by user de160346.