comp-biology

Intel Pentium E5200 testing with a Shuttle FG31 and Intel 82G33/G31 IGP on Fedora 17 (Beefy Miracle) via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1505244-UT-COMPBIOLO83
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Result
Identifier
Performance Per
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Date
Run
  Test
  Duration
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May 24 2015
 
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Processor: Intel Pentium E5200 @ 2.50GHz (2 Cores), Motherboard: Shuttle FG31, Chipset: Intel 82G33/G31/P35/P31 + ICH7, Memory: 3584MB, Disk: 1000GB Western Digital WD1001FALS-0, Graphics: LLVMpipe, Audio: Realtek ALC888, Network: Marvell 88E8057 PCI-E Gigabit

OS: Fedora 17 (Beefy Miracle), Kernel: 3.7.9-104.fc17.i686 (i686), Desktop: Xfce 4.8, Display Server: X Server 1.12.4, OpenGL: 2.1 Mesa 8.0.4 Gallium 0.4, Compiler: GCC 4.7.2 20120921, File-System: ext4, Screen Resolution: 1920x1080

Compiler Notes: --build=i686-redhat-linux --disable-build-poststage1-with-cxx --disable-build-with-cxx --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-initfini-array --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-libgcj-multifile --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-linker-hash-style=gnu --with-ppl --with-tune=generic
Processor Notes: Scaling Governor: acpi- freq ondemand

comp-biologyOpenBenchmarking.orgPhoronix Test SuiteIntel Pentium E5200 @ 2.50GHz (2 Cores)Shuttle FG31Intel 82G33/G31/P35/P31 + ICH73584MB1000GB Western Digital WD1001FALS-0LLVMpipeRealtek ALC888Marvell 88E8057 PCI-E GigabitFedora 17 (Beefy Miracle)3.7.9-104.fc17.i686 (i686)Xfce 4.8X Server 1.12.42.1 Mesa 8.0.4 Gallium 0.4GCC 4.7.2 20120921ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionComp-biology BenchmarksSystem Logs- --build=i686-redhat-linux --disable-build-poststage1-with-cxx --disable-build-with-cxx --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-initfini-array --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-libgcj-multifile --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-linker-hash-style=gnu --with-ppl --with-tune=generic - Scaling Governor: acpi- freq ondemand

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchnoclue1224364860SE +/- 0.61, N = 355.461. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentnoclue714212835SE +/- 0.02, N = 328.141. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisnoclue1224364860SE +/- 0.67, N = 352.12

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Processor: Intel Pentium E5200 @ 2.50GHz (2 Cores), Motherboard: Shuttle FG31, Chipset: Intel 82G33/G31/P35/P31 + ICH7, Memory: 3584MB, Disk: 1000GB Western Digital WD1001FALS-0, Graphics: LLVMpipe, Audio: Realtek ALC888, Network: Marvell 88E8057 PCI-E Gigabit

OS: Fedora 17 (Beefy Miracle), Kernel: 3.7.9-104.fc17.i686 (i686), Desktop: Xfce 4.8, Display Server: X Server 1.12.4, OpenGL: 2.1 Mesa 8.0.4 Gallium 0.4, Compiler: GCC 4.7.2 20120921, File-System: ext4, Screen Resolution: 1920x1080

Compiler Notes: --build=i686-redhat-linux --disable-build-poststage1-with-cxx --disable-build-with-cxx --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-initfini-array --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-libgcj-multifile --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-linker-hash-style=gnu --with-ppl --with-tune=generic
Processor Notes: Scaling Governor: acpi- freq ondemand

Testing initiated at 24 May 2015 10:54 by user root.