comp-biology

Intel Pentium E5200 testing with a Shuttle FG31 and Intel 82G33/G31 IGP on Fedora 17 (Beefy Miracle) via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1505244-UT-COMPBIOLO83.

comp-biologyProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionnoclueIntel Pentium E5200 @ 2.50GHz (2 Cores)Shuttle FG31Intel 82G33/G31/P35/P31 + ICH73584MB1000GB Western Digital WD1001FALS-0LLVMpipeRealtek ALC888Marvell 88E8057 PCI-E GigabitFedora 17 (Beefy Miracle)3.7.9-104.fc17.i686 (i686)Xfce 4.8X Server 1.12.42.1 Mesa 8.0.4 Gallium 0.4GCC 4.7.2 20120921ext41920x1080OpenBenchmarking.org- --build=i686-redhat-linux --disable-build-poststage1-with-cxx --disable-build-with-cxx --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-initfini-array --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-libgcj-multifile --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-linker-hash-style=gnu --with-ppl --with-tune=generic - Scaling Governor: acpi- freq ondemand

comp-biologyhmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysisnoclue55.4628.1452.12OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchnoclue1224364860SE +/- 0.61, N = 355.461. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentnoclue714212835SE +/- 0.02, N = 328.141. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisnoclue1224364860SE +/- 0.67, N = 352.12

Phoronix Test Suite v10.8.4