testebioinformaticsdebian2

KVM QEMU testing on Debian 11 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2312163-NE-TESTEBIOI03.

testebioinformaticsdebian2ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionSystem LayerQEMU Virtual 2.5QEMU Virtual 2.5+ (8 Cores)QEMU Standard PC (i440FX + PIIX 1996) (rel-1.16.2-0-gea1b7a073390-prebuilt.qemu.org BIOS)Intel 440FX 82441FX PMC3584MB86GB QEMU HDDllvmpipeQEMU MonitorRed Hat Virtio deviceDebian 115.10.0-26-amd64 (x86_64)GNOME Shell 3.38.6X Server + Wayland4.5 Mesa 20.3.5 (LLVM 11.0.1 128 bits)GCC 10.2.1 20210110ext41280x800KVM QEMUOpenBenchmarking.org- Transparent Huge Pages: always- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0x1- Python 3.9.2- gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX unsupported + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines STIBP: disabled RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

testebioinformaticsdebian2mrbayes: Primate Phylogeny Analysisqmcpack: H4_aeqmcpack: Li2_STO_aeqmcpack: LiH_ae_MSDqmcpack: simple-H2Oqmcpack: O_ae_pyscf_UHFqmcpack: FeCO6_b3lyp_gmshmmer: Pfam Database Searchhimeno: Poisson Pressure SolverQEMU Virtual 2.5581.388155.41593.4524.16113.05802.72807.45298.3502102.982772OpenBenchmarking.org

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny AnalysisQEMU Virtual 2.5130260390520650SE +/- 3.11, N = 3568.941. (CC) gcc options: -mmmx -msse -msse2 -mssse3 -msse4.1 -msse4.2 -maes -O3 -std=c99 -pedantic -lm

QMCPACK

Input: H4_ae

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: H4_aeQEMU Virtual 2.5306090120150SE +/- 1.81, N = 12155.41. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

QMCPACK

Input: Li2_STO_ae

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: Li2_STO_aeQEMU Virtual 2.530060090012001500SE +/- 1.60, N = 31593.41. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

QMCPACK

Input: LiH_ae_MSD

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: LiH_ae_MSDQEMU Virtual 2.5110220330440550SE +/- 2.43, N = 3524.161. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

QMCPACK

Input: simple-H2O

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: simple-H2OQEMU Virtual 2.5306090120150SE +/- 0.22, N = 3113.051. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

QMCPACK

Input: O_ae_pyscf_UHF

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: O_ae_pyscf_UHFQEMU Virtual 2.52004006008001000SE +/- 3.36, N = 3802.721. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

QMCPACK

Input: FeCO6_b3lyp_gms

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: FeCO6_b3lyp_gmsQEMU Virtual 2.52004006008001000SE +/- 2.16, N = 3807.451. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database SearchQEMU Virtual 2.560120180240300SE +/- 16.98, N = 9298.351. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Himeno Benchmark

Poisson Pressure Solver

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverQEMU Virtual 2.55001000150020002500SE +/- 13.93, N = 142102.981. (CC) gcc options: -O3

Phoronix Test Suite v10.8.4