bioinfo-benchmark-8core

VMware testing on Ubuntu 22.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2210215-NE-BIOINFOBE75.

bioinfo-benchmark-8coreProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelVulkanCompilerFile-SystemScreen ResolutionSystem Layerrun1run28 x Intel Xeon Gold 6348 (15 Cores)Intel 440BX (6.00 BIOS)Intel 440BX/ZX/DX32GB215GB Virtual diskVMware SVGA IIVMware VMXNET3Ubuntu 22.045.15.0-48-generic (x86_64)1.2.204GCC 11.2.0ext4800x600VMwareOpenBenchmarking.orgKernel Details- Transparent Huge Pages: madviseCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- CPU Microcode: 0xd0002b1Python Details- Python 3.10.6Security Details- itlb_multihit: KVM: Mitigation of VMX unsupported + l1tf: Mitigation of PTE Inversion + mds: Mitigation of Clear buffers; SMT Host state unknown + meltdown: Mitigation of PTI + mmio_stale_data: Mitigation of Clear buffers; SMT Host state unknown + retbleed: Mitigation of IBRS + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

bioinfo-benchmark-8coremrbayes: Primate Phylogeny Analysisqmcpack: simple-H2Ohmmer: Pfam Database Searchmafft: Multiple Sequence Alignment - LSU RNAhimeno: Poisson Pressure Solverrun1run2120.64629.432142.15110.1883890.603766120.33029.792142.19210.1563906.144595OpenBenchmarking.org

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisrun1run2306090120150SE +/- 0.18, N = 3SE +/- 0.07, N = 3120.65120.331. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -mabm -O3 -std=c99 -pedantic -lm

QMCPACK

Input: simple-H2O

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.13Input: simple-H2Orun1run2714212835SE +/- 0.04, N = 3SE +/- 0.07, N = 329.4329.791. (CXX) g++ options: -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm -ldl

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Searchrun1run2306090120150SE +/- 0.09, N = 3SE +/- 0.05, N = 3142.15142.191. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNArun1run23691215SE +/- 0.10, N = 6SE +/- 0.04, N = 310.1910.161. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Himeno Benchmark

Poisson Pressure Solver

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverrun1run28001600240032004000SE +/- 6.12, N = 3SE +/- 10.29, N = 33890.603906.141. (CC) gcc options: -O3 -mavx2

Phoronix Test Suite v10.8.4