6258R-relion-3d

2 x Intel Xeon Gold 6258R testing with a Supermicro X11DPG-OT-CPU v1.01 (3.4 BIOS) and ASPEED on Ubuntu 20.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2109095-HOWE-6258RRE71.

6258R-relion-3dProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen Resolution12 x Intel Xeon Gold 6258R @ 4.00GHz (56 Cores / 112 Threads)Supermicro X11DPG-OT-CPU v1.01 (3.4 BIOS)Intel Sky Lake-E DMI3 Registers16 x 32 GB DDR4-2933MT/s Micron 36ASF4G72PZ-2G9E2960GB INTEL SSDSC2KB96ASPEED9662 x Intel X722 for 10GBASE-TUbuntu 20.045.11.0-25-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.9GCC 10.3.0 + CUDA 11.2ext41440x900OpenBenchmarking.org- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-S4I5Pr/gcc-10-10.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-S4I5Pr/gcc-10-10.3.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5003102- itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

6258R-relion-3drelion: Class3D - CPUStandard ErrorStandard Deviation11273.9040.680.09%OpenBenchmarking.org

RELION

Test: Class3D - Device: CPU

OpenBenchmarking.orgSeconds, Fewer Is BetterRELION 3.1.1Test: Class3D - Device: CPU130060090012001500SE +/- 0.68, N = 31273.901. (CXX) g++ options: -fopenmp -std=c++0x -O3 -rdynamic -ldl -ltiff -lfftw3f -lfftw3 -lpthread -lrt -pthread -lmpi_cxx -lmpi

Phoronix Test Suite v10.8.4