6258R-relion-3d
2 x Intel Xeon Gold 6258R testing with a Supermicro X11DPG-OT-CPU v1.01 (3.4 BIOS) and ASPEED on Ubuntu 20.04 via the Phoronix Test Suite.
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Processor: 2 x Intel Xeon Gold 6258R @ 4.00GHz (56 Cores / 112 Threads), Motherboard: Supermicro X11DPG-OT-CPU v1.01 (3.4 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 16 x 32 GB DDR4-2933MT/s Micron 36ASF4G72PZ-2G9E2, Disk: 960GB INTEL SSDSC2KB96, Graphics: ASPEED, Monitor: 966, Network: 2 x Intel X722 for 10GBASE-T
OS: Ubuntu 20.04, Kernel: 5.11.0-25-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.9, Compiler: GCC 10.3.0 + CUDA 11.2, File-System: ext4, Screen Resolution: 1440x900
Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-S4I5Pr/gcc-10-10.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-S4I5Pr/gcc-10-10.3.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5003102
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled
RELION
RELION - REgularised LIkelihood OptimisatioN - is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy (cryo-EM). It is developed in the research group of Sjors Scheres at the MRC Laboratory of Molecular Biology. Learn more via the OpenBenchmarking.org test page.
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Processor: 2 x Intel Xeon Gold 6258R @ 4.00GHz (56 Cores / 112 Threads), Motherboard: Supermicro X11DPG-OT-CPU v1.01 (3.4 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 16 x 32 GB DDR4-2933MT/s Micron 36ASF4G72PZ-2G9E2, Disk: 960GB INTEL SSDSC2KB96, Graphics: ASPEED, Monitor: 966, Network: 2 x Intel X722 for 10GBASE-T
OS: Ubuntu 20.04, Kernel: 5.11.0-25-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.9, Compiler: GCC 10.3.0 + CUDA 11.2, File-System: ext4, Screen Resolution: 1440x900
Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-S4I5Pr/gcc-10-10.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-S4I5Pr/gcc-10-10.3.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5003102
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled
Testing initiated at 9 September 2021 21:24 by user howell.