bioinformatics-40c-shared

Bioinformatics 40c Shared

HTML result view exported from: https://openbenchmarking.org/result/2106037-IB-BIOINFORM58&gru.

bioinformatics-40c-sharedProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionSystem Layerbioinformatics-40c-shared2 x Intel Xeon (Skylake IBRS) (40 Cores)OpenStack Foundation Nova v21.0.0 (1.13.0-1ubuntu1.1 BIOS)Intel 440FX 82441FX PMC16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 8192 MB RAM50GBCirrus Logic GD 5446Red Hat Virtio deviceUbuntu 20.045.4.0-74-generic (x86_64)GCC 9.3.0ext41024x768KVMOpenBenchmarking.org- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0x1- itlb_multihit: Not affected + l1tf: Mitigation of PTE Inversion; VMX: flush not necessary SMT disabled + mds: Mitigation of Clear buffers; SMT Host state unknown + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT Host state unknown

bioinformatics-40c-sharedhimeno: Poisson Pressure Solvermrbayes: Primate Phylogeny Analysishmmer: Pfam Database Searchmafft: Multiple Sequence Alignment - LSU RNAqmcpack: simple-H2Obioinformatics-40c-shared3154.140783261.609186.49214.29256.685OpenBenchmarking.org

Himeno Benchmark

Poisson Pressure Solver

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverbioinformatics-40c-shared7001400210028003500SE +/- 12.04, N = 33154.141. (CC) gcc options: -O3 -mavx2

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisbioinformatics-40c-shared60120180240300SE +/- 0.61, N = 3261.611. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Searchbioinformatics-40c-shared4080120160200SE +/- 2.38, N = 3186.491. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAbioinformatics-40c-shared48121620SE +/- 0.10, N = 314.291. (CC) gcc options: -std=c99 -O3 -lm -lpthread

QMCPACK

Input: simple-H2O

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.11Input: simple-H2Obioinformatics-40c-shared1326395265SE +/- 0.17, N = 356.691. (CXX) g++ options: -fopenmp -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O3 -fomit-frame-pointer -ffast-math -pthread -lm

Phoronix Test Suite v10.8.4