namd-test

Intel Xeon Gold 5218 testing with a Supermicro X11DDW-L v1.11 (3.1 BIOS) and GDI Generic on CentOS Linux 7 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2103151-HA-2103151HA11.

namd-testProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDisplay DriverCompilerFile-SystemScreen ResolutionDesktopDisplay ServerOpenGLIntel Core i5-6400Intel Xeon Gold 5218Intel Core i5-6400 @ 3.30GHz (4 Cores)Dell 0XJ8C4 (2.6.1 BIOS)Intel Xeon E3-1200 v5/E3-15002 x 4096 MB DDR4-2400MT/s IM44GU48N24-FFFHA01000GB Seagate ST1000DM003-1ER1Intel HD 530 (950MHz)Realtek ALC3861Intel I219-VCentOS Linux 73.10.0-957.27.2.el7.x86_64 (x86_64)intelGCC 4.8.5 20150623xfs1920x1080Intel Xeon Gold 5218 @ 2.30GHz (16 Cores / 32 Threads)Supermicro X11DDW-L v1.11 (3.1 BIOS)Intel Sky Lake-E DMI3 Registers2 x 8192 MB DDR4-2400MT/s 18ASF1G72PZ-2G3B1QG240GB VK000240GWJPDGDI Generic2 x Intel X722 for 1GbE3.10.0-957.el7.x86_64 (x86_64)GNOME Shell 3.28.3X Server 1.20.11.1.01536x824OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysProcessor Details- Intel Core i5-6400: Scaling Governor: intel_pstate performance - CPU Microcode: 0xcc- Intel Xeon Gold 5218: Scaling Governor: acpi-cpufreq conservative (Boost: Enabled) - CPU Microcode: 0x4000024Security Details- Intel Core i5-6400: l1tf: Mitigation of PTE Inversion; VMX: vulnerable SMT disabled + mds: Vulnerable; SMT disabled + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Vulnerable IBPB - Intel Xeon Gold 5218: SELinux + l1tf: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS

namd-testnamd: ATPase Simulation - 327,506 AtomsDifferenceStandard ErrorStandard DeviationIntel Core i5-6400Intel Xeon Gold 52185.411941.00x0.030.81%1.569571.71x0.50%OpenBenchmarking.org

NAMD

ATPase Simulation - 327,506 Atoms

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsIntel Core i5-6400Intel Xeon Gold 52181.21772.43543.65314.87086.0885SE +/- 0.02546, N = 3SE +/- 0.00450, N = 35.411941.56957

Phoronix Test Suite v10.8.4