namd-test

Intel Xeon Gold 5218 testing with a Supermicro X11DDW-L v1.11 (3.1 BIOS) and GDI Generic on CentOS Linux 7 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2103151-HA-2103151HA11
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
Intel Core i5-6400
March 15 2021
  13 Minutes
Intel Xeon Gold 5218
March 15 2021
  4 Minutes
Invert Hiding All Results Option
  9 Minutes

Intel Core i5-6400

Processor: Intel Core i5-6400 @ 3.30GHz (4 Cores), Motherboard: Dell 0XJ8C4 (2.6.1 BIOS), Chipset: Intel Xeon E3-1200 v5/E3-1500, Memory: 2 x 4096 MB DDR4-2400MT/s IM44GU48N24-FFFHA0, Disk: 1000GB Seagate ST1000DM003-1ER1, Graphics: Intel HD 530 (950MHz), Audio: Realtek ALC3861, Network: Intel I219-V

OS: CentOS Linux 7, Kernel: 3.10.0-957.27.2.el7.x86_64 (x86_64), Display Driver: intel, Compiler: GCC 4.8.5 20150623, File-System: xfs, Screen Resolution: 1920x1080

Kernel Notes: Transparent Huge Pages: always
Processor Notes: Scaling Governor: intel_pstate performance - CPU Microcode: 0xcc
Security Notes: l1tf: Mitigation of PTE Inversion; VMX: vulnerable SMT disabled + mds: Vulnerable; SMT disabled + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Vulnerable IBPB

Intel Xeon Gold 5218

Processor: Intel Xeon Gold 5218 @ 2.30GHz (16 Cores / 32 Threads), Motherboard: Supermicro X11DDW-L v1.11 (3.1 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 2 x 8192 MB DDR4-2400MT/s 18ASF1G72PZ-2G3B1QG, Disk: 240GB VK000240GWJPD, Graphics: GDI Generic, Network: 2 x Intel X722 for 1GbE

OS: CentOS Linux 7, Kernel: 3.10.0-957.el7.x86_64 (x86_64), Desktop: GNOME Shell 3.28.3, Display Server: X Server 1.20.1, OpenGL: 1.1.0, Compiler: GCC 4.8.5 20150623, File-System: xfs, Screen Resolution: 1536x824

Kernel Notes: Transparent Huge Pages: always
Processor Notes: Scaling Governor: acpi-cpufreq conservative (Boost: Enabled) - CPU Microcode: 0x4000024
Security Notes: SELinux + l1tf: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS

namd-testProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDisplay DriverCompilerFile-SystemScreen ResolutionDesktopDisplay ServerOpenGLIntel Core i5-6400Intel Xeon Gold 5218Intel Core i5-6400 @ 3.30GHz (4 Cores)Dell 0XJ8C4 (2.6.1 BIOS)Intel Xeon E3-1200 v5/E3-15002 x 4096 MB DDR4-2400MT/s IM44GU48N24-FFFHA01000GB Seagate ST1000DM003-1ER1Intel HD 530 (950MHz)Realtek ALC3861Intel I219-VCentOS Linux 73.10.0-957.27.2.el7.x86_64 (x86_64)intelGCC 4.8.5 20150623xfs1920x1080Intel Xeon Gold 5218 @ 2.30GHz (16 Cores / 32 Threads)Supermicro X11DDW-L v1.11 (3.1 BIOS)Intel Sky Lake-E DMI3 Registers2 x 8192 MB DDR4-2400MT/s 18ASF1G72PZ-2G3B1QG240GB VK000240GWJPDGDI Generic2 x Intel X722 for 1GbE3.10.0-957.el7.x86_64 (x86_64)GNOME Shell 3.28.3X Server 1.20.11.1.01536x824OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysProcessor Details- Intel Core i5-6400: Scaling Governor: intel_pstate performance - CPU Microcode: 0xcc- Intel Xeon Gold 5218: Scaling Governor: acpi-cpufreq conservative (Boost: Enabled) - CPU Microcode: 0x4000024Security Details- Intel Core i5-6400: l1tf: Mitigation of PTE Inversion; VMX: vulnerable SMT disabled + mds: Vulnerable; SMT disabled + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Vulnerable IBPB - Intel Xeon Gold 5218: SELinux + l1tf: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsIntel Core i5-6400Intel Xeon Gold 52181.21772.43543.65314.87086.0885SE +/- 0.02546, N = 3SE +/- 0.00450, N = 35.411941.56957
OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsIntel Core i5-6400Intel Xeon Gold 5218246810Min: 5.37 / Avg: 5.41 / Max: 5.46Min: 1.56 / Avg: 1.57 / Max: 1.58

Intel Core i5-6400

Processor: Intel Core i5-6400 @ 3.30GHz (4 Cores), Motherboard: Dell 0XJ8C4 (2.6.1 BIOS), Chipset: Intel Xeon E3-1200 v5/E3-1500, Memory: 2 x 4096 MB DDR4-2400MT/s IM44GU48N24-FFFHA0, Disk: 1000GB Seagate ST1000DM003-1ER1, Graphics: Intel HD 530 (950MHz), Audio: Realtek ALC3861, Network: Intel I219-V

OS: CentOS Linux 7, Kernel: 3.10.0-957.27.2.el7.x86_64 (x86_64), Display Driver: intel, Compiler: GCC 4.8.5 20150623, File-System: xfs, Screen Resolution: 1920x1080

Kernel Notes: Transparent Huge Pages: always
Processor Notes: Scaling Governor: intel_pstate performance - CPU Microcode: 0xcc
Security Notes: l1tf: Mitigation of PTE Inversion; VMX: vulnerable SMT disabled + mds: Vulnerable; SMT disabled + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Vulnerable IBPB

Testing initiated at 15 March 2021 00:05 by user .

Intel Xeon Gold 5218

Processor: Intel Xeon Gold 5218 @ 2.30GHz (16 Cores / 32 Threads), Motherboard: Supermicro X11DDW-L v1.11 (3.1 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 2 x 8192 MB DDR4-2400MT/s 18ASF1G72PZ-2G3B1QG, Disk: 240GB VK000240GWJPD, Graphics: GDI Generic, Network: 2 x Intel X722 for 1GbE

OS: CentOS Linux 7, Kernel: 3.10.0-957.el7.x86_64 (x86_64), Desktop: GNOME Shell 3.28.3, Display Server: X Server 1.20.1, OpenGL: 1.1.0, Compiler: GCC 4.8.5 20150623, File-System: xfs, Screen Resolution: 1536x824

Kernel Notes: Transparent Huge Pages: always
Processor Notes: Scaling Governor: acpi-cpufreq conservative (Boost: Enabled) - CPU Microcode: 0x4000024
Security Notes: SELinux + l1tf: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS

Testing initiated at 15 March 2021 01:05 by user .