epyc_bioinformatics

AMD EPYC 7232P 8-Core testing with a ASRockRack ROMED6U-2L2T (L0.08 BIOS) and llvmpipe 94GB on Fedora 32 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2007312-NE-EPYCBIOIN21.

epyc_bioinformaticsProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen Resolutionepyv_rome_bioAMD EPYC 7232P 8-Core @ 3.10GHz (8 Cores / 16 Threads)ASRockRack ROMED6U-2L2T (L0.08 BIOS)AMD Starship/Matisse96GB512GB KXG60ZNV512G TOSHIBAllvmpipe 94GBDELL 1908WFP2 x Intel X710 for 10GBASE-T + 2 x Intel I210Fedora 325.7.10-201.fc32.x86_64 (x86_64)GNOME Shell 3.36.4X Server + Wayland3.3 Mesa 20.1.4 (LLVM 10.0.0 256 bits)GCC 10.2.1 20200723 + Clang 10.0.0ext41440x900OpenBenchmarking.org- --build=x86_64-redhat-linux --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,lto --enable-multilib --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-gcc-major-version-only --with-isl --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301034- SELinux + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

epyc_bioinformaticsmrbayes: Primate Phylogeny Analysisqmcpack: hmmer: Pfam Database Searchhimeno: Poisson Pressure Solverepyv_rome_bio87.191728.385.7743526.754563OpenBenchmarking.org

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisepyv_rome_bio20406080100SE +/- 0.04, N = 387.191. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4a -msha -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm

QMCPACK

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8epyv_rome_bio160320480640800728.381. (CXX) g++ options: -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O2 -ffast-math

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchepyv_rome_bio1.29922.59843.89765.19686.496SE +/- 0.047, N = 35.7741. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Himeno Benchmark

Poisson Pressure Solver

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverepyv_rome_bio8001600240032004000SE +/- 46.01, N = 33526.751. (CC) gcc options: -O3 -mavx2

Phoronix Test Suite v10.8.4