computational-biology-intel

Running pts/hmmer-1.1.0, pts/mafft-1.4.0 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1504272-KH-1504276KH67.

computational-biology-intelProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDisplay DriverOpenGLCompilerFile-SystemScreen Resolutiongcc51-on-intelgcc51-on-amd2 x Intel Xeon E5-2699 v3 @ 3.60GHz (72 Cores)Intel S2600WTTIntel Xeon E5 v3/Core194560MB1000GB Western Digital WD1003FZEX-0Intel HD 5000hp L1730Intel 10-Gigabit X540-AT2CentOS 6.63.10.72-1.el6.elrepo.x86_64 (x86_64)modesetting 0.8.01.4GCC 5.1.0nfs1440x877GCC 4.4.7 20120313 + Clang 3.4.2 + LLVM 3.4.2OpenBenchmarking.orgCompiler Details- gcc51-on-intel: --disable-multilib --disable-nls --disable-werror --enable-checking=release --enable-host-shared --enable-languages=c,c++,objc,obj-c++,fortran,go,jit --enable-libstdcxx-time=yes --enable-lto --enable-plugin --enable-stage1-checking --with-boot-ldflags='-static-libstdc++ --with-build-time-tools=/data/linuxbrew/Cellar/binutils/2.25/x86_64-unknown-linux-gnu/bin --with-fortran --with-glibc --with-gmp=/data/linuxbrew/opt/gmp --with-go --with-jit' --with-mpc=/data/linuxbrew/opt/libmpc --with-mpfr=/data/linuxbrew/opt/mpfr --with-native-system-header-dir=/data/linuxbrew/include --with-stage1-ldflags='-static-libstdc++ -L/data/linuxbrew/lib -L/data/linuxbrew/lib -L/data/linuxbrew/opt/isl014/lib -L/data/linuxbrew/opt/isl014/lib -Wl,--dynamic-linker=/data/linuxbrew/opt/glibc/lib/ld-linux-x86-64.so.2 -Wl,--dynamic-linker=/data/linuxbrew/opt/glibc/lib/ld-linux-x86-64.so.2 -Wl,-rpath,/data/linuxbrew/lib' -Wl,-rpath,/data/linuxbrew/lib' -static-libgcc -static-libgcc - gcc51-on-amd: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic Processor Details- gcc51-on-intel: Scaling Governor: intel_pstate performance- gcc51-on-amd: Scaling Governor: acpi-cpufreq performance

computational-biology-intelhmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentgcc51-on-intelgcc51-on-amd18.1927.2011.4220.01OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchgcc51-on-intelgcc51-on-amd48121620SE +/- 0.24, N = 3SE +/- 0.15, N = 318.1911.421. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentgcc51-on-intelgcc51-on-amd612182430SE +/- 0.86, N = 6SE +/- 0.39, N = 327.2020.011. (CC) gcc options: -O3 -lm -lpthread

Phoronix Test Suite v10.8.4