computational-biology-intel

Running pts/hmmer-1.1.0, pts/mafft-1.4.0 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1504272-KH-1504276KH67
Jump To Table - Results

View

Do Not Show Noisy Results
Do Not Show Results With Incomplete Data
Do Not Show Results With Little Change/Spread
List Notable Results

Limit displaying results to tests within:

Bioinformatics 2 Tests
C/C++ Compiler Tests 2 Tests
CPU Massive 2 Tests
HPC - High Performance Computing 2 Tests
Scientific Computing 2 Tests

Statistics

Show Overall Harmonic Mean(s)
Show Overall Geometric Mean
Show Geometric Means Per-Suite/Category
Show Wins / Losses Counts (Pie Chart)
Normalize Results
Remove Outliers Before Calculating Averages

Graph Settings

Force Line Graphs Where Applicable
Convert To Scalar Where Applicable
Disable Color Branding
Prefer Vertical Bar Graphs

Table

Show Detailed System Result Table

Run Management

Highlight
Result
Hide
Result
Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
gcc51-on-intel
April 27 2015
 
gcc51-on-amd
April 27 2015
 
Invert Hiding All Results Option
 
Only show results matching title/arguments (delimit multiple options with a comma):
Do not show results matching title/arguments (delimit multiple options with a comma):


computational-biology-intelOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon E5-2699 v3 @ 3.60GHz (72 Cores)Intel S2600WTTIntel Xeon E5 v3/Core194560MB1000GB Western Digital WD1003FZEX-0Intel HD 5000hp L1730Intel 10-Gigabit X540-AT2CentOS 6.63.10.72-1.el6.elrepo.x86_64 (x86_64)modesetting 0.8.01.4GCC 5.1.0GCC 4.4.7 20120313 + Clang 3.4.2 + LLVM 3.4.2nfs1440x877ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDisplay DriverOpenGLCompilersFile-SystemScreen ResolutionComputational-biology-intel BenchmarksSystem Logs- gcc51-on-intel: --disable-multilib --disable-nls --disable-werror --enable-checking=release --enable-host-shared --enable-languages=c,c++,objc,obj-c++,fortran,go,jit --enable-libstdcxx-time=yes --enable-lto --enable-plugin --enable-stage1-checking --with-boot-ldflags='-static-libstdc++ --with-build-time-tools=/data/linuxbrew/Cellar/binutils/2.25/x86_64-unknown-linux-gnu/bin --with-fortran --with-glibc --with-gmp=/data/linuxbrew/opt/gmp --with-go --with-jit' --with-mpc=/data/linuxbrew/opt/libmpc --with-mpfr=/data/linuxbrew/opt/mpfr --with-native-system-header-dir=/data/linuxbrew/include --with-stage1-ldflags='-static-libstdc++ -L/data/linuxbrew/lib -L/data/linuxbrew/lib -L/data/linuxbrew/opt/isl014/lib -L/data/linuxbrew/opt/isl014/lib -Wl,--dynamic-linker=/data/linuxbrew/opt/glibc/lib/ld-linux-x86-64.so.2 -Wl,--dynamic-linker=/data/linuxbrew/opt/glibc/lib/ld-linux-x86-64.so.2 -Wl,-rpath,/data/linuxbrew/lib' -Wl,-rpath,/data/linuxbrew/lib' -static-libgcc -static-libgcc - gcc51-on-amd: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic - gcc51-on-intel: Scaling Governor: intel_pstate performance- gcc51-on-amd: Scaling Governor: acpi-cpufreq performance

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchgcc51-on-intelgcc51-on-amd48121620SE +/- 0.24, N = 3SE +/- 0.15, N = 318.1911.421. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchgcc51-on-intelgcc51-on-amd510152025Min: 17.71 / Avg: 18.19 / Max: 18.47Min: 11.25 / Avg: 11.42 / Max: 11.711. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentgcc51-on-intelgcc51-on-amd612182430SE +/- 0.86, N = 6SE +/- 0.39, N = 327.2020.011. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentgcc51-on-intelgcc51-on-amd612182430Min: 24.56 / Avg: 27.2 / Max: 29.85Min: 19.28 / Avg: 20.01 / Max: 20.621. (CC) gcc options: -O3 -lm -lpthread