NAS Parallel Benchmarks 1.4.1

pts/npb-1.4.1 - 07 March 2020 - Add --alow-run-as-root, ended up being missed until now.

downloads.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v9.4.1-->
<PhoronixTestSuite>
  <Downloads>
    <Package>
      <URL>https://www.nas.nasa.gov/assets/npb/NPB3.4.tar.gz</URL>
      <MD5>b1b963cc86803b185f0907b24d11c840</MD5>
      <SHA256>991bb15ee34f1cff434d22d8228e3d8cb34ea9fea8c2920dda6582233897cc18</SHA256>
      <FileName>NPB3.4.tar.gz</FileName>
      <FileSize>420400</FileSize>
    </Package>
  </Downloads>
</PhoronixTestSuite>

install.sh

#!/bin/sh

tar -zxf NPB3.4.tar.gz
MPI_CC=mpicc
if [ ! "X$MPI_PATH" = "X" ] && [ -d $MPI_PATH ] && [ -d $MPI_INCLUDE ] && [ -x $MPI_CC ] && [ -e $MPI_LIBS ]
then
	# PRE-SET MPI
	echo "Using pre-set environment variables."
elif [ -d /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi ]
then
	# OpenMPI
	MPI_PATH=/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi/
	MPI_INCLUDE=/usr/include/openmpi/
	MPI_LIBS=/usr/lib/x86_64-linux-gnu/libmpi.so
	MPI_CC=/usr/bin/mpicc.openmpi
	MPI_VERSION=`$MPI_CC -showme:version 2>&1 | grep MPI | cut -d "(" -f1  | cut -d ":" -f2`
elif [ -d /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3 ]
then
	# OpenMPI
	MPI_PATH=/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/
	MPI_INCLUDE=/usr/include/
	MPI_LIBS=/usr/lib/x86_64-linux-gnu/libmpi.so
	MPI_CC=/usr/bin/mpicc.openmpi
	MPI_VERSION=`$MPI_CC -showme:version 2>&1 | grep MPI | cut -d "(" -f1  | cut -d ":" -f2`
elif [ -d /usr/lib/openmpi/include ]
then
	# OpenMPI
	MPI_PATH=/usr/lib/openmpi
	MPI_INCLUDE=/usr/lib/openmpi/include
	MPI_LIBS=/usr/lib/openmpi/lib/libmpi.so
	MPI_CC=/usr/bin/mpicc.openmpi
	MPI_VERSION=`$MPI_CC -showme:version 2>&1 | grep MPI | cut -d "(" -f1  | cut -d ":" -f2`
elif [ -d /usr/lib/mpich/include ]
then
	# MPICH
	MPI_PATH=/usr/lib/mpich
	MPI_INCLUDE=/usr/lib/mpich/include
	MPI_LIBS=/usr/lib/mpich/lib/libmpich.so.1.0
	MPI_CC=/usr/bin/mpicc.mpich
	MPI_VERSION=`$MPI_CC -v 2>&1 | grep "MPICH version"` 
elif [ -d /usr/include/mpich2 ]
then
	# MPICH2
	MPI_PATH=/usr/include/mpich2
	MPI_INCLUDE=/usr/include/mpich2
	MPI_LIBS=/usr/lib/mpich2/lib/libmpich.so
	MPI_CC=/usr/bin/mpicc.mpich2
	MPI_VERSION=`$MPI_CC -v 2>&1 | grep "MPICH2 version"` 
fi

if [ ! "X$MPI_VERSION" = "X" ]
then
	echo $MPI_VERSION > ~/install-footnote
fi

if [ "X$CFLAGS_OVERRIDE" = "X" ]
then
          CFLAGS="$CFLAGS -O3 -march=native"
else
          CFLAGS="$CFLAGS_OVERRIDE"
fi

# Should have all the necessary variables for both OpenMP and MPI tests
echo "F77 = gfortran
MPIFC = mpif90
MPIF77 = mpif77
FLINK	= \$(MPIF77)
FMPI_LIB  = -L$MPI_LIBS
FMPI_INC = -I$MPI_INCLUDE
FFLAGS	= $CFLAGS
FLINKFLAGS = \$(FFLAGS)
MPICC = $MPI_CC
CLINK	= $MPI_CC
CMPI_LIB  = -L$MPI_LIBS
CMPI_INC = -I$MPI_INCLUDE
CFLAGS	= $CFLAGS
CLINKFLAGS = \$(CFLAGS)
CC	= cc -g
BINDIR	= ../bin
RAND   = randi8
C_LIB  = -lm
WTIME  = wtime.c
" > NPB3.4/NPB3.4-MPI/config/make.def

# Copy over OpenMP make for when using that...
cp NPB3.4/NPB3.4-MPI/config/make.def NPB3.4/NPB3.4-OMP/config/make.def

cd ~/NPB3.4/NPB3.4-MPI/

make bt CLASS=A
make bt CLASS=C
make ep CLASS=C
make ep CLASS=D
make ft CLASS=A
make ft CLASS=B
make ft CLASS=C
make lu CLASS=A
make lu CLASS=C
make sp CLASS=A
make sp CLASS=B
make is CLASS=D
make mg CLASS=C
make cg CLASS=C
echo $? > ~/install-exit-status

cd ~
echo "#!/bin/sh
cd NPB3.4/NPB3.4-MPI/

if [ \"X\$NUM_CPU_PHYSICAL_CORES\" = \"X\" ]
then
	NUM_THREADS=\$NUM_CPU_CORES
else
	NUM_THREADS=\$NUM_CPU_PHYSICAL_CORES
fi

if [ ! \"X\$HOSTFILE\" = \"X\" ] && [ -f \$HOSTFILE ]
then
	HOSTFILE=\"--hostfile \$HOSTFILE\"
elif [ -f /etc/hostfile ]
then
	HOSTFILE=\"--hostfile /etc/hostfile\"
else
	HOSTFILE=\"\"
fi

mpiexec --allow-run-as-root -np \$NUM_THREADS \$HOSTFILE ./bin/\$@.x > \$LOG_FILE 2>&1
echo \$? > ~/test-exit-status" > npb
chmod +x npb

results-definition.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v9.4.1-->
<PhoronixTestSuite>
  <ResultsParser>
    <OutputTemplate> Mop/s total     =                  #_RESULT_#</OutputTemplate>
    <LineHint>Mop/s total</LineHint>
  </ResultsParser>
</PhoronixTestSuite>

test-definition.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v9.4.1-->
<PhoronixTestSuite>
  <TestInformation>
    <Title>NAS Parallel Benchmarks</Title>
    <AppVersion>3.4</AppVersion>
    <Description>NPB, NAS Parallel Benchmarks, is a benchmark developed by NASA for high-end computer systems. This test profile currently uses the MPI version of NPB. This test profile offers selecting the different NPB tests/problems and varying problem sizes.</Description>
    <ResultScale>Total Mop/s</ResultScale>
    <Proportion>HIB</Proportion>
    <TimesToRun>3</TimesToRun>
  </TestInformation>
  <TestProfile>
    <Version>1.4.1</Version>
    <SupportedPlatforms>Linux, Solaris, BSD</SupportedPlatforms>
    <SoftwareType>Benchmark</SoftwareType>
    <TestType>Processor</TestType>
    <License>Free</License>
    <Status>Verified</Status>
    <ExternalDependencies>build-utilities, fortran-compiler, openmpi-development</ExternalDependencies>
    <EnvironmentSize>8</EnvironmentSize>
    <ProjectURL>http://www.nas.nasa.gov/Resources/Software/npb.html</ProjectURL>
    <InternalTags>SMP, MPI</InternalTags>
    <Maintainer>Michael Larabel</Maintainer>
  </TestProfile>
  <TestSettings>
    <Option>
      <DisplayName>Test / Class</DisplayName>
      <Identifier>run-test</Identifier>
      <Menu>
        <Entry>
          <Name>BT.C</Name>
          <Value>bt.C</Value>
          <Message>Block Tri-diagonal solver</Message>
        </Entry>
        <Entry>
          <Name>EP.C</Name>
          <Value>ep.C</Value>
          <Message>Embarrassingly Parallel</Message>
        </Entry>
        <Entry>
          <Name>EP.D</Name>
          <Value>ep.D</Value>
          <Message>Embarrassingly Parallel</Message>
        </Entry>
        <Entry>
          <Name>FT.C</Name>
          <Value>ft.C</Value>
          <Message>discrete 3D fast Fourier Transform</Message>
        </Entry>
        <Entry>
          <Name>LU.C</Name>
          <Value>lu.C</Value>
          <Message>Lower-Upper Gauss-Seidel solver</Message>
        </Entry>
        <Entry>
          <Name>SP.B</Name>
          <Value>sp.B</Value>
          <Message>Scalar Penta-diagonal solver</Message>
        </Entry>
        <Entry>
          <Name>IS.D</Name>
          <Value>is.D</Value>
          <Message>Integer Sort</Message>
        </Entry>
        <Entry>
          <Name>MG.C</Name>
          <Value>mg.C</Value>
          <Message>Multi-Grid on a sequence of meshes</Message>
        </Entry>
        <Entry>
          <Name>CG.C</Name>
          <Value>cg.C</Value>
          <Message>Conjugate Gradient</Message>
        </Entry>
      </Menu>
    </Option>
  </TestSettings>
</PhoronixTestSuite>