NAMD On AMD Threadripper AMD Ryzen Threadripper 2950X 16-Core testing with a MSI MEG X399 CREATION (MS-7B92) v1.0 (1.10 BIOS) and NV136 6144MB on Ubuntu 18.04 via the Phoronix Test Suite.
HTML result view exported from: https://openbenchmarking.org/result/1809198-RA-NAMDONAMD32 .
NAMD On AMD Threadripper Processor Motherboard Chipset Memory Disk Graphics Audio Monitor Network OS Kernel Desktop Display Server Display Driver OpenGL Compiler File-System Screen Resolution Threadripper 2950X AMD Ryzen Threadripper 2950X 16-Core @ 2.57GHz (16 Cores / 32 Threads) MSI MEG X399 CREATION (MS-7B92) v1.0 (1.10 BIOS) AMD Family 17h 32768MB 525GB 2115 + Samsung SSD 970 EVO 250GB NV136 6144MB Realtek ALC1220 ASUS PB278 Intel I211 Gigabit Connection + Intel Device 2526 Ubuntu 18.04 4.15.0-34-generic (x86_64) GNOME Shell 3.28.3 X Server 1.19.6 modesetting 1.19.6 4.3 Mesa 18.0.5 GCC 7.3.0 ext4 2560x1440 OpenBenchmarking.org - __user pointer sanitization + Full AMD retpoline IBPB + SSB disabled via prctl and seccomp
NAMD On AMD Threadripper namd: ATPase Simulation - 327,506 Atoms Standard Deviation Threadripper 2950X 1.27752 0.44% OpenBenchmarking.org
NAMD ATPase Simulation - 327,506 Atoms OpenBenchmarking.org days/ns, Fewer Is Better NAMD 2.13b1 ATPase Simulation - 327,506 Atoms Threadripper 2950X 0.2874 0.5748 0.8622 1.1496 1.437 SE +/- 0.00325, N = 3 1.27752
Phoronix Test Suite v10.8.4