biology

Intel Core i5 650 testing with a HP 304Ah and NVIDIA GeForce GT 440 1024MB on Ubuntu 18.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1805172-KH-BIOLOGY1355.

biologyProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerOpenGLFile-SystemScreen Resolution1Intel Core i5 650 @ 3.33GHz (4 Cores)HP 304AhIntel Core DRAM4 x 2048 MB DDR3-1333MT/s240GB Western Digital WDS240G2G0A-NVIDIA GeForce GT 440 1024MBRealtek ALC662 rev1Intel 82578DM Gigabit ConnectionUbuntu 18.044.15.0-20-generic (x86_64)GNOME Shell 3.28.1X Server 1.19.63.0 Mesa 18.0.0-rc5ext43600x1080OpenBenchmarking.org- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-as=/usr/bin/x86_64-linux-gnu-as --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-ld=/usr/bin/x86_64-linux-gnu-ld --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq ondemand

biologyhmmer: Pfam Database Searchmafft: Multiple Sequence Alignment147.8724.35OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search11122334455SE +/- 1.16, N = 647.871. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignment1612182430SE +/- 1.17, N = 624.351. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Phoronix Test Suite v10.8.4