biology

Intel Core i5 650 testing with a HP 304Ah and NVIDIA GeForce GT 440 1024MB on Ubuntu 18.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1805172-KH-BIOLOGY1355
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Result
Identifier
Performance Per
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Date
Run
  Test
  Duration
1
May 17 2018
 
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biologyOpenBenchmarking.orgPhoronix Test SuiteIntel Core i5 650 @ 3.33GHz (4 Cores)HP 304AhIntel Core DRAM4 x 2048 MB DDR3-1333MT/s240GB Western Digital WDS240G2G0A-NVIDIA GeForce GT 440 1024MBRealtek ALC662 rev1Intel 82578DM Gigabit ConnectionUbuntu 18.044.15.0-20-generic (x86_64)GNOME Shell 3.28.1X Server 1.19.63.0 Mesa 18.0.0-rc5ext43600x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerOpenGLFile-SystemScreen ResolutionBiology BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-as=/usr/bin/x86_64-linux-gnu-as --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-ld=/usr/bin/x86_64-linux-gnu-ld --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq ondemand

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search11122334455SE +/- 1.16, N = 647.871. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignment1612182430SE +/- 1.17, N = 624.351. (CC) gcc options: -std=c99 -O3 -lm -lpthread