Computational Biology echedey-500-500ns

AMD A8-6500 APU testing with a HP 2B35 v2.0 (80.06 BIOS) and NVD9 1024MB on PureOS 8 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1805072-FO-COMPUTATI89.

Computational Biology echedey-500-500nsProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionAMD A8-6500 APUAMD A8-6500 APU @ 3.50GHz (2 Cores / 4 Threads)HP 2B35 v2.0 (80.06 BIOS)AMD Family 15h16384MB1000GB Seagate ST1000DM003-1ER1 + 3001GB TOSHIBA DT01ACA3 + 1000GB External USB 3.0NVD9 1024MBRealtek ALC662 rev3Monitor TVRealtek RTL8111/8168/8411 + Realtek RTL8188EE WirelessPureOS 84.15.0-3-amd64 (x86_64)GNOME Shell 3.28.0Wayland4.3 Mesa 17.3.9GCC 7.3.0 + Clang 4.0.1-10ext41920x1080OpenBenchmarking.org- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq ondemand- __user pointer sanitization + Full AMD retpoline Protection

Computational Biology echedey-500-500nshmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny AnalysisAMD A8-6500 APU22.2211.16612.81OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchAMD A8-6500 APU510152025SE +/- 0.71, N = 622.221. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence AlignmentAMD A8-6500 APU3691215SE +/- 0.07, N = 311.161. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny AnalysisAMD A8-6500 APU130260390520650SE +/- 0.66, N = 3612.811. (CC) gcc options: -O3 -msse -mfpmath=sse -march=native -lm -pthread -lmpi

Phoronix Test Suite v10.8.4