computational-biology-20171122234241

20171122234241

HTML result view exported from: https://openbenchmarking.org/result/1711223-TY-COMPUTATI91.

computational-biology-20171122234241ProcessorMotherboardMemoryDiskGraphicsOSKernelCompilerFile-SystemScreen ResolutionSystem Layer201711222342412 x Intel Core (Broadwell) @ 2.10GHz (2 Cores)OpenStack Foundation Nova v13.1.28192MB25GBEFI VGAUbuntu 16.04.3 LTS4.4.0-92-generic (x86_64)GCC 5.4.0 20160609aufs800x600dockerOpenBenchmarking.org- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

computational-biology-20171122234241hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysis2017112223424132.1310.96829.63OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search20171122234241714212835SE +/- 0.20, N = 532.131. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment201711222342413691215SE +/- 0.26, N = 1010.961. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis201711222342412004006008001000SE +/- 1.56, N = 5829.63

Phoronix Test Suite v10.8.4