computational-biology-20171121035555

20171121035555

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20171121035555
November 21 2017
 
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20171121035555

Processor: 4 x Intel Core (Haswell no TSX) @ 2.29GHz (4 Cores), Motherboard: OpenStack Foundation Nova v13.1.2, Memory: 16384MB, Disk: 25GB, Graphics: cirrusdrmfb

OS: Ubuntu 16.04.3 LTS, Kernel: 4.4.0-96-generic (x86_64), Compiler: GCC 5.4.0 20160609, File-System: aufs, Screen Resolution: 1024x768, System Layer: docker

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

computational-biology-20171121035555OpenBenchmarking.orgPhoronix Test Suite4 x Intel Core (Haswell no TSX) @ 2.29GHz (4 Cores)OpenStack Foundation Nova v13.1.216384MB25GBcirrusdrmfbUbuntu 16.04.3 LTS4.4.0-96-generic (x86_64)GCC 5.4.0 20160609aufs1024x768dockerProcessorMotherboardMemoryDiskGraphicsOSKernelCompilerFile-SystemScreen ResolutionSystem LayerComputational-biology-20171121035555 BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search20171121035555612182430SE +/- 0.14, N = 1026.221. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment20171121035555246810SE +/- 0.15, N = 208.671. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis20171121035555130260390520650SE +/- 3.09, N = 10594.55

20171121035555

Processor: 4 x Intel Core (Haswell no TSX) @ 2.29GHz (4 Cores), Motherboard: OpenStack Foundation Nova v13.1.2, Memory: 16384MB, Disk: 25GB, Graphics: cirrusdrmfb

OS: Ubuntu 16.04.3 LTS, Kernel: 4.4.0-96-generic (x86_64), Compiler: GCC 5.4.0 20160609, File-System: aufs, Screen Resolution: 1024x768, System Layer: docker

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Testing initiated at 21 November 2017 04:01 by user root.