computational-biologyk

computational-biologyk

HTML result view exported from: https://openbenchmarking.org/result/1606083-GA-COMPUTATI27.

computational-biologykProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-Systemcomputational-biologykIntel Xeon E5-2680 v3 @ 2.49GHz (4 Cores)Red Hat KVMIntel 440FX- 82441FX PMC1 x 8192 MB RAM20GBCirrus Logic GD 5446Red Hat Virtio deviceCentOS 6.52.6.32-431.29.2.el6.x86_64 (x86_64)GCC 4.4.7 20120313ext4OpenBenchmarking.org- --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic

computational-biologykhmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysiscomputational-biologyk19.078.6459.17OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchcomputational-biologyk510152025SE +/- 0.05, N = 319.071. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentcomputational-biologyk246810SE +/- 0.20, N = 68.641. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysiscomputational-biologyk1326395265SE +/- 0.63, N = 359.17

Phoronix Test Suite v10.8.4