cpass

Running first CompBio suite

HTML result view exported from: https://openbenchmarking.org/result/1601190-SO-CPASS442022.

cpassProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionFCompBioIntel Core i7-5820K @ 3.60GHz (12 Cores)Gigabyte X99-SLI-CFIntel Haswell-E DMI232768MB2000GB Seagate ST2000DM001-1ER1NVIDIA Quadro K620 2048MBIntel Wellsburg HD AudioIntel ConnectionUbuntu 14.043.16.0-57-generic (x86_64)Unity 7.2.6X Server 1.16.0nouveau 1.0.11GCC 4.8ext41920x1080OpenBenchmarking.org- --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: intel_pstate powersave

cpasshmmer: Pfam Database Searchmafft: Multiple Sequence AlignmentFCompBio8.184.54OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchFCompBio246810SE +/- 0.02, N = 38.181. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentFCompBio1.02152.0433.06454.0865.1075SE +/- 0.08, N = 64.541. (CC) gcc options: -O3 -lm -lpthread


Phoronix Test Suite v10.8.4