cpass

Running first CompBio suite

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1601190-SO-CPASS442022
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Result
Identifier
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Performance Per
Dollar
Date
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  Test
  Duration
FCompBio
January 18 2016
 
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cpassOpenBenchmarking.orgPhoronix Test SuiteIntel Core i7-5820K @ 3.60GHz (12 Cores)Gigabyte X99-SLI-CFIntel Haswell-E DMI232768MB2000GB Seagate ST2000DM001-1ER1NVIDIA Quadro K620 2048MBIntel Wellsburg HD AudioIntel ConnectionUbuntu 14.043.16.0-57-generic (x86_64)Unity 7.2.6X Server 1.16.0nouveau 1.0.11GCC 4.8ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionCpass PerformanceSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: intel_pstate powersave

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchFCompBio246810SE +/- 0.02, N = 38.181. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentFCompBio1.02152.0433.06454.0865.1075SE +/- 0.08, N = 64.541. (CC) gcc options: -O3 -lm -lpthread