comp_bio.txt

Intel Core i7-4770K testing with a Gigabyte H87M-D3H and NVIDIA GeForce GTX 770 4096MB on Ubuntu 14.10 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1406225-SO-COMPBIOTX27.

comp_bio.txtProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen ResolutionComp_bioIntel Core i7-4770K @ 3.50GHz (8 Cores)Gigabyte H87M-D3HIntel 4th Gen Core DRAM16384MB1000GB TOSHIBA DT01ACA1NVIDIA GeForce GTX 770 4096MB (540/3505MHz)Intel 8 /C220Realtek RTL8111/8168/8411Ubuntu 14.103.15.0-6-generic (i686)Unity 7.3.0X Server 1.15.1GCC 4.8ext43840x2160OpenBenchmarking.org- --build=i686-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-targets=all --enable-threads=posix --host=i686-linux-gnu --target=i686-linux-gnu --with-arch-32=i686 --with-arch-directory=i386 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-i386/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-i386 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-i386 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand

comp_bio.txthmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny AnalysisComp_bio12.438.7137.53OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchComp_bio3691215SE +/- 0.01, N = 312.431. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentComp_bio246810SE +/- 0.33, N = 68.711. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny AnalysisComp_bio918273645SE +/- 1.71, N = 637.53

Phoronix Test Suite v10.8.4