med-git_bio

VMware testing on CentOS 6.4 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1305233-FO-MEDGITBIO74&grt.

med-git_bioProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDesktopDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionSystem Layermed-git_bioIntel Xeon X5355 @ 2.66GHz (2 Cores)Intel 440BXIntel 440BX/ZX/DX16384MB75GB Virtual disk + 107GB Virtual diskVMware SVGA IIVMware VMXNET3CentOS 6.42.6.32-358.el6.x86_64 (x86_64)KDE 4.3.4vmware 12.0.21.2 (1.5 Mesa 6.4.1)GCC 4.4.7 20120313nfs1594x1117VMwareOpenBenchmarking.org- --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic

med-git_biohmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysismed-git_bio70.6725.35100.58OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchmed-git_bio1632486480SE +/- 1.14, N = 670.671. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentmed-git_bio612182430SE +/- 0.08, N = 325.351. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysismed-git_bio20406080100SE +/- 0.76, N = 3100.58

Phoronix Test Suite v10.8.4