computational-roger

Intel Xeon E3-1230 V2 testing with a Gigabyte H77M-D3H and AMD Radeon HD 6800 1024MB on archlinux rolling via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1210137-SU-1210132SU48
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Bioinformatics 3 Tests
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Intel Xeon E3-1230 V2
October 13 2012
 
kronos
October 13 2012
 
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computational-rogerProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionIntel Xeon E3-1230 V2kronosIntel Xeon E3-1230 V2 @ 3.70GHz (8 Cores)Gigabyte H77M-D3HIntel Xeon E3-1200 v2/Ivy8192MB64GB M4-CT064M4SSD2 + 500GB Western Digital WD5000BPVT-0 + 1500GB Seagate ST31500541ASAMD Radeon HD 6800 1024MB (775/1000MHz)Intel 7 /C210Acer G215HVAtheros AR8151 v2.0 Gigabitarchlinux rolling3.6.1-cmr (x86_64)X Server 1.12.4radeon 6.14.62.1 Mesa 8.0.4 Gallium 0.4GCC 4.7.2 + Clang 3.1 + LLVM 3.1ext41920x10802 x Intel Xeon X5460 @ 3.15GHz (8 Cores)IBM PlanarIntel 5000P MCH16384MB2 x 2000GB Western Digital WD20EARS-00M + 2 x 2000GB Western Digital WD20EARX-00PAMD ATI ES1000 128MBBroadcom NetXtreme II BCM5708 GigabitLinux3.6.2-1-ARCH (x86_64)1024x768OpenBenchmarking.orgCompiler Details- --disable-build-poststage1-with-cxx --disable-build-with-cxx --disable-cloog-version-check --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-multilib --disable-ppl-version-check --enable-__cxa_atexit --enable-checking=release --enable-clocale=gnu --enable-cloog-backend=isl --enable-gnu-unique-object --enable-gold --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-ld=default --enable-libstdcxx-time --enable-lto --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-linker-hash-style=gnu --with-plugin-ld=ld.gold --with-ppl Processor Details- Intel Xeon E3-1230 V2: Scaling Governor: performance- kronos: Scaling Governor: ondemandSystem Details- Intel Xeon E3-1230 V2: Firefox was running on this system.

Intel Xeon E3-1230 V2 vs. kronos ComparisonPhoronix Test SuiteBaseline+26.8%+26.8%+53.6%+53.6%+80.4%+80.4%Composite107.2%P.P.A86.2%Total Time72.6%R.T.P.I.C68.9%C.C.4.S59.7%P.D.S52.8%Elapsed Time38.8%Solitaire20%M.S.A14%SciMarkTimed MrBayes AnalysisGMPbenchdcrawFhourstonesTimed HMMer SearchCraftyMinionTimed MAFFT AlignmentIntel Xeon E3-1230 V2kronos

computational-rogerhmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysisgmpbench: Total Timefhourstones: Complex Connect-4 Solvingscimark2: Compositecrafty: Elapsed Timedcraw: RAW To PPM Image Conversionminion: Solitairesudokut: Total TimeIntel Xeon E3-1230 V2kronos11.035.7712.883353.7013297.231256.5575.0555.59115.6520.7916.856.5823.981943.408326.57606.30104.1693.91138.75OpenBenchmarking.org

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchIntel Xeon E3-1230 V2kronos48121620SE +/- 0.08, N = 3SE +/- 0.60, N = 611.0316.851. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchIntel Xeon E3-1230 V2kronos48121620Min: 10.89 / Avg: 11.03 / Max: 11.16Min: 16.19 / Avg: 16.85 / Max: 19.851. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentIntel Xeon E3-1230 V2kronos246810SE +/- 0.10, N = 6SE +/- 0.09, N = 65.776.581. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentIntel Xeon E3-1230 V2kronos3691215Min: 5.48 / Avg: 5.77 / Max: 6.05Min: 6.43 / Avg: 6.58 / Max: 7.041. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny AnalysisIntel Xeon E3-1230 V2kronos612182430SE +/- 0.04, N = 3SE +/- 0.17, N = 312.8823.98
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny AnalysisIntel Xeon E3-1230 V2kronos612182430Min: 12.83 / Avg: 12.88 / Max: 12.96Min: 23.76 / Avg: 23.98 / Max: 24.32

GMPbench

OpenBenchmarking.orgGMPbench Score, More Is BetterGMPbench 0.2Total TimeIntel Xeon E3-1230 V2kronos70014002100280035003353.701943.401. (CC) gcc options: -O3 -fomit-frame-pointer

Fhourstones

OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 SolvingIntel Xeon E3-1230 V2kronos3K6K9K12K15KSE +/- 14.65, N = 3SE +/- 30.26, N = 313297.238326.571. (CC) gcc options: -O3
OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 SolvingIntel Xeon E3-1230 V2kronos2K4K6K8K10KMin: 13270 / Avg: 13297.23 / Max: 13320.2Min: 8266.9 / Avg: 8326.57 / Max: 8365.21. (CC) gcc options: -O3

SciMark

OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0CompositeIntel Xeon E3-1230 V2kronos30060090012001500SE +/- 0.30, N = 4SE +/- 0.86, N = 41256.55606.30
OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0CompositeIntel Xeon E3-1230 V2kronos2004006008001000Min: 1255.99 / Avg: 1256.55 / Max: 1257.39Min: 604.34 / Avg: 606.3 / Max: 608.27

Crafty

OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed TimeIntel Xeon E3-1230 V2kronos20406080100SE +/- 0.13, N = 3SE +/- 0.09, N = 375.05104.161. (CC) gcc options: -lstdc++ -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed TimeIntel Xeon E3-1230 V2kronos20406080100Min: 74.84 / Avg: 75.05 / Max: 75.3Min: 103.98 / Avg: 104.16 / Max: 104.271. (CC) gcc options: -lstdc++ -lm

dcraw

This test times how long it takes to convert several high-resolution RAW NEF image files to PPM image format using dcraw. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image ConversionIntel Xeon E3-1230 V2kronos20406080100SE +/- 0.06, N = 3SE +/- 1.53, N = 455.5993.911. (CC) gcc options: -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image ConversionIntel Xeon E3-1230 V2kronos20406080100Min: 55.47 / Avg: 55.59 / Max: 55.68Min: 89.43 / Avg: 93.91 / Max: 96.311. (CC) gcc options: -lm

Minion

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12SolitaireIntel Xeon E3-1230 V2kronos306090120150SE +/- 0.37, N = 3SE +/- 0.16, N = 3115.65138.751. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams -lz -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12SolitaireIntel Xeon E3-1230 V2kronos306090120150Min: 115.01 / Avg: 115.65 / Max: 116.28Min: 138.49 / Avg: 138.75 / Max: 139.051. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams -lz -lbz2

Sudokut

This is a test of Sudokut, which is a Sudoku puzzle solver written in Tcl. This test measures how long it takes to solve 100 Sudoku puzzles. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total TimeIntel Xeon E3-1230 V2510152025SE +/- 0.08, N = 320.79