pts-computational-biology

2 x AMD Opteron 6212 testing with a Supermicro H8DG6/H8DGi v1.0 and Matrox MGA G200eW WPCM450 1024MB on Ubuntu 12.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1207305-AR-PTSCOMPUT12.

pts-computational-biologyProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemScreen Resolutionfake-raid2 x AMD Opteron 6212 @ 2.60GHz (16 Cores)Supermicro H8DG6/H8DGi v1.0AMD nee ATI RD890 + SB7x0/SB8x0/SB9x032768MB160GB Western Digital WD1600AAJS-7 + 2 x 2000GB Seagate ST32000645NSMatrox MGA G200eW WPCM450 1024MB (810/600MHz)NVIDIA GPU 1c HDMI/DPDELL 1901FPIntel 82576 Gigabit ConnectionUbuntu 12.043.2.0-27-generic (x86_64)Unity 2D 5.12.0X Server 1.11.3nouveau 0.0.16GCC 4.6ext41280x1024OpenBenchmarking.org

pts-computational-biologyhmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysisfake-raid14.457.9635.87OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchfake-raid48121620SE +/- 0.10, N = 314.45

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentfake-raid246810SE +/- 0.07, N = 37.96

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisfake-raid816243240SE +/- 0.12, N = 335.87

Phoronix Test Suite v10.8.4