GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This system/gromacs test profile relies on the OS provided GROMACS (gmx_mpi) package as opposed to the existing pts/gromacs test profile that builds the same version from the upstream source code.

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark system/gromacs.

Project Site

gromacs.org

Source Repository

github.com

Test Created

2 August 2024

Test Maintainer

Michael Larabel 

Test Type

System

Average Install Time

3 Seconds

Average Run Time

5 Minutes, 11 Seconds

Test Dependencies

OpenMPI

Accolades

Recently Created Test Profile

Supported Platforms


Revision History

system/gromacs-1.0.0   [View Source]   Fri, 02 Aug 2024 10:44:06 GMT
Add system/gromacs version of pts/gromacs.


Performance Metrics

Analyze Test Configuration:

GROMACS

Input: water_GMX50_bare

OpenBenchmarking.org metrics for this test profile configuration based on 55 public results since 2 August 2024 with the latest data as of 5 August 2024.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
# Compatible Public Results
Ns Per Day (Average)
87th
4
4.300 +/- 0.013
81st
5
1.767 +/- 0.005
Mid-Tier
75th
< 1.177
67th
4
0.811 +/- 0.032
58th
3
0.760 +/- 0.041
56th
3
0.748 +/- 0.042
52nd
4
0.737 +/- 0.007
Median
50th
0.730
41st
3
0.673 +/- 0.017
38th
3
0.533 +/- 0.001
32nd
3
0.505 +/- 0.001
Low-Tier
25th
< 0.460
20th
3
0.403 +/- 0.001
14th
4
0.381 +/- 0.001
5th
4
0.369 +/- 0.001
OpenBenchmarking.orgDistribution Of Public Results - Input: water_GMX50_bare24 Results Range From 0 To 5 Ns Per Day0.4170.8341.2511.6682.0852.5022.9193.3363.7534.174.5875.00448121620

Based on OpenBenchmarking.org data, the selected test / test configuration (GROMACS - Input: water_GMX50_bare) has an average run-time of 3 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkInput: water_GMX50_bareRun-Time246810Min: 2 / Avg: 2 / Max: 2

Tested CPU Architectures

This benchmark has been successfully tested on the below mentioned architectures. The CPU architectures listed is where successful OpenBenchmarking.org result uploads occurred, namely for helping to determine if a given test is compatible with various alternative CPU architectures.

CPU Architecture
Kernel Identifier
Verified On
Intel / AMD x86 64-bit
x86_64
(Many Processors)

Recent Test Results

OpenBenchmarking.org Results Compare

3 Systems - 25 Benchmark Results

AMD Ryzen 9 5900HX - ASUS ROG Strix G513QY_G513QY G513QY v1.0 - AMD Renoir

Ubuntu 24.04 - 6.10.0-061000rc4daily20240621-generic - GNOME Shell 46.0

3 Systems - 25 Benchmark Results

Intel Core Ultra 7 155H - MTL Swift SFG14-72T Coral_MTH - Intel Device 7e7f

Ubuntu 24.04 - 6.10.0-061000rc4daily20240621-generic - GNOME Shell 46.0

3 Systems - 15 Benchmark Results

AMD Ryzen AI 9 365 - ASUS Zenbook S 16 UM5606WA_UM5606WA UM5606WA v1.0 - AMD Device 1507

Ubuntu 24.04 - 6.10.0-phx - GNOME Shell 46.0

3 Systems - 20 Benchmark Results

AMD Ryzen AI 9 HX 370 - ASUS Zenbook S 16 UM5606WA_UM5606WA UM5606WA v1.0 - AMD Device 1507

Ubuntu 24.04 - 6.10.0-phx - GNOME Shell 46.0

3 Systems - 15 Benchmark Results

AMD Ryzen Threadripper 7980X 64-Cores - System76 Thelio Major - AMD Device 14a4

Ubuntu 24.04 - 6.10.0-061000daily20240725-generic - GNOME Shell 46.0

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