hmmer 0905

2 x Intel Xeon Gold 6248 testing with a Dell PowerEdge R740xd 0WXD1Y (2.21.2 BIOS) and Matrox G200eW3 on Ubuntu 24.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2409056-NE-HMMER090521.

hmmer 0905ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen Resolution2 x Intel Xeon Gold 62482 x Intel Xeon Gold 6248 @ 3.90GHz (40 Cores / 80 Threads)Dell PowerEdge R740xd 0WXD1Y (2.21.2 BIOS)Intel Sky Lake-E DMI3 Registers768GB8 x Dell Flash NVMe P4800X 375GB SFF + 16 x 960GB Dell Flash CD5 960G SFF + 240GB DELLBOSS VDMatrox G200eW32 x Mellanox MT27710 + 4 x Mellanox MT28800Ubuntu 24.046.8.0-41-generic (x86_64)GCC 13.2.0ext41024x768OpenBenchmarking.org- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-backtrace --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_cpufreq schedutil - CPU Microcode: 0x5003707- gather_data_sampling: Mitigation of Microcode + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + reg_file_data_sampling: Not affected + retbleed: Mitigation of Enhanced IBRS + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS; IBPB: conditional; RSB filling; PBRSB-eIBRS: SW sequence; BHI: SW loop KVM: SW loop + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

hmmer 0905hmmer: Pfam Database SearchStandard ErrorStandard Deviation2 x Intel Xeon Gold 6248167.5410.190.20%OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search2 x Intel Xeon Gold 62484080120160200SE +/- 0.19, N = 3167.541. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Phoronix Test Suite v10.8.5