cp2k-benchmark-2024-03-02

2 x Intel Xeon E5-2699 v4 testing with a Supermicro X10DRL-i v1.01 (3.4 BIOS) and ASPEED on Ubuntu 22.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2403022-NE-CP2KBENCH40
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Result
Identifier
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Performance Per
Dollar
Date
Run
  Test
  Duration
2 x Intel Xeon E5-2699 v4
March 02
  6 Minutes
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{ "title": "cp2k-benchmark-2024-03-02", "last_modified": "2024-03-02 21:00:02", "description": "2 x Intel Xeon E5-2699 v4 testing with a Supermicro X10DRL-i v1.01 (3.4 BIOS) and ASPEED on Ubuntu 22.04 via the Phoronix Test Suite.", "systems": { "2 x Intel Xeon E5-2699 v4": { "identifier": "2 x Intel Xeon E5-2699 v4", "hardware": { "Processor": "2 x Intel Xeon E5-2699 v4 @ 3.60GHz (44 Cores \/ 88 Threads)", "Motherboard": "Supermicro X10DRL-i v1.01 (3.4 BIOS)", "Chipset": "Intel Xeon E7 v4\/Xeon", "Memory": "128GB", "Disk": "1920GB INTEL SSDSC2KG01", "Graphics": "ASPEED", "Network": "2 x Intel I210" }, "software": { "OS": "Ubuntu 22.04", "Kernel": "6.5.0-21-generic (x86_64)", "Display Server": "X Server 1.21.1.4", "Vulkan": "1.3.255", "Compiler": "GCC 11.4.0", "File-System": "ext4", "Screen Resolution": "1024x768" }, "user": "eszkin", "timestamp": "2024-03-02 20:52:06", "client_version": "10.8.4", "data": { "compiler-configuration": "--build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=\/build\/gcc-11-XeT9lY\/gcc-11-11.4.0\/debian\/tmp-nvptx\/usr,amdgcn-amdhsa=\/build\/gcc-11-XeT9lY\/gcc-11-11.4.0\/debian\/tmp-gcn\/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v", "cpu-scaling-governor": "intel_cpufreq performance", "cpu-microcode": "0xb000040", "kernel-extra-details": "Transparent Huge Pages: madvise", "python": "Python 3.10.12", "security": "gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy\/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable" } } }, "results": { "3000db5b87a9e2a81872ffb2a2d41d94a574e766": { "identifier": "pts\/cp2k-1.4.1", "title": "CP2K Molecular Dynamics", "app_version": "2023.1", "arguments": "-i benchmarks\/QS\/H2O-64.inp", "description": "Input: H20-64", "scale": "Seconds", "proportion": "LIB", "display_format": "BAR_GRAPH", "results": { "2 x Intel Xeon E5-2699 v4": { "value": 63.320999999999997953636921010911464691162109375, "test_run_times": [ 64.3700000000000045474735088646411895751953125 ], "details": { "compiler-options": { "compiler-type": "F9X", "compiler": "gfortran", "compiler-options": "-fopenmp -mtune=native -O3 -funroll-loops -fbacktrace -ffree-form -fimplicit-none -std=f2008 -lcp2kstart -lcp2kmc -lcp2kswarm -lcp2kmotion -lcp2kthermostat -lcp2kemd -lcp2ktmc -lcp2kmain -lcp2kdbt -lcp2ktas -lcp2kdbm -lcp2kgrid -lcp2kgridcpu -lcp2kgridref -lcp2kgridcommon -ldbcsrarnoldi -ldbcsrx -lcp2kshg_int -lcp2keri_mme -lcp2kminimax -lcp2khfxbase -lcp2ksubsys -lcp2kxc -lcp2kao -lcp2kpw_env -lcp2kinput -lcp2kpw -lcp2kgpu -lcp2kfft -lcp2kfpga -lcp2kfm -lcp2kcommon -lcp2koffload -lcp2kmpiwrap -lcp2kbase -ldbcsr -lsirius -lspla -lspfft -lsymspg -lvdwxc -lhdf5 -lhdf5_hl -lz -lgsl -lelpa_openmp -lcosma -lcosta -lscalapack -lxsmmf -lxsmm -ldl -lpthread -lxcf03 -lxc -lint2 -lfftw3_mpi -lfftw3 -lfftw3_omp -lmpi_cxx -lmpi -lopenblas -lvori -lstdc++ -lmpi_usempif08 -lmpi_mpifh -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lm" } } } } }, "9e00262538fc3fe467252c2f8ba6a79b1bed2cdc": { "identifier": "pts\/cp2k-1.4.1", "title": "CP2K Molecular Dynamics", "app_version": "2023.1", "arguments": "-i benchmarks\/QS_DM_LS\/H2O-dft-ls.inp", "description": "Input: H2O-DFT-LS", "scale": "Seconds", "proportion": "LIB", "display_format": "BAR_GRAPH", "results": { "2 x Intel Xeon E5-2699 v4": { "test_run_times": [ 50.14999999999999857891452847979962825775146484375 ], "details": { "compiler-options": { "compiler-type": "F9X", "compiler": "gfortran", "compiler-options": "-fopenmp -mtune=native -O3 -funroll-loops -fbacktrace -ffree-form -fimplicit-none -std=f2008 -lcp2kstart -lcp2kmc -lcp2kswarm -lcp2kmotion -lcp2kthermostat -lcp2kemd -lcp2ktmc -lcp2kmain -lcp2kdbt -lcp2ktas -lcp2kdbm -lcp2kgrid -lcp2kgridcpu -lcp2kgridref -lcp2kgridcommon -ldbcsrarnoldi -ldbcsrx -lcp2kshg_int -lcp2keri_mme -lcp2kminimax -lcp2khfxbase -lcp2ksubsys -lcp2kxc -lcp2kao -lcp2kpw_env -lcp2kinput -lcp2kpw -lcp2kgpu -lcp2kfft -lcp2kfpga -lcp2kfm -lcp2kcommon -lcp2koffload -lcp2kmpiwrap -lcp2kbase -ldbcsr -lsirius -lspla -lspfft -lsymspg -lvdwxc -lhdf5 -lhdf5_hl -lz -lgsl -lelpa_openmp -lcosma -lcosta -lscalapack -lxsmmf -lxsmm -ldl -lpthread -lxcf03 -lxc -lint2 -lfftw3_mpi -lfftw3 -lfftw3_omp -lmpi_cxx -lmpi -lopenblas -lvori -lstdc++ -lmpi_usempif08 -lmpi_mpifh -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lm" }, "error": "The test quit with a non-zero exit status. E: mpirun noticed that process rank 9 with PID 0 on node eszkin-Super-Server exited on signal 9 (Killed)." } } } }, "b6bdd568e58e2cad320267f943f544ab378bca7d": { "identifier": "pts\/cp2k-1.4.1", "title": "CP2K Molecular Dynamics", "app_version": "2023.1", "arguments": "-i benchmarks\/Fayalite-FIST\/fayalite.inp", "description": "Input: Fayalite-FIST", "scale": "Seconds", "proportion": "LIB", "display_format": "BAR_GRAPH", "results": { "2 x Intel Xeon E5-2699 v4": { "value": 192.394000000000005456968210637569427490234375, "test_run_times": [ 193.69999999999998863131622783839702606201171875 ], "details": { "compiler-options": { "compiler-type": "F9X", "compiler": "gfortran", "compiler-options": "-fopenmp -mtune=native -O3 -funroll-loops -fbacktrace -ffree-form -fimplicit-none -std=f2008 -lcp2kstart -lcp2kmc -lcp2kswarm -lcp2kmotion -lcp2kthermostat -lcp2kemd -lcp2ktmc -lcp2kmain -lcp2kdbt -lcp2ktas -lcp2kdbm -lcp2kgrid -lcp2kgridcpu -lcp2kgridref -lcp2kgridcommon -ldbcsrarnoldi -ldbcsrx -lcp2kshg_int -lcp2keri_mme -lcp2kminimax -lcp2khfxbase -lcp2ksubsys -lcp2kxc -lcp2kao -lcp2kpw_env -lcp2kinput -lcp2kpw -lcp2kgpu -lcp2kfft -lcp2kfpga -lcp2kfm -lcp2kcommon -lcp2koffload -lcp2kmpiwrap -lcp2kbase -ldbcsr -lsirius -lspla -lspfft -lsymspg -lvdwxc -lhdf5 -lhdf5_hl -lz -lgsl -lelpa_openmp -lcosma -lcosta -lscalapack -lxsmmf -lxsmm -ldl -lpthread -lxcf03 -lxc -lint2 -lfftw3_mpi -lfftw3 -lfftw3_omp -lmpi_cxx -lmpi -lopenblas -lvori -lstdc++ -lmpi_usempif08 -lmpi_mpifh -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lm" } } } } } } }