gromacs namd laptop

AMD Ryzen 7 7840U testing with a PHX Swift SFE16-43 Ray_PEU (V1.04 BIOS) and AMD Phoenix1 512MB on Ubuntu 23.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2402164-NE-GROMACSNA32
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a
February 16
  1 Hour, 8 Minutes
b
February 16
  8 Minutes
c
February 16
  7 Minutes
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{ "title": "gromacs namd laptop", "last_modified": "2024-02-16 22:42:02", "description": "AMD Ryzen 7 7840U testing with a PHX Swift SFE16-43 Ray_PEU (V1.04 BIOS) and AMD Phoenix1 512MB on Ubuntu 23.10 via the Phoronix Test Suite.", "systems": { "a": { "identifier": "a", "hardware": { "Processor": "AMD Ryzen 7 7840U @ 5.29GHz (8 Cores \/ 16 Threads)", "Motherboard": "PHX Swift SFE16-43 Ray_PEU (V1.04 BIOS)", "Chipset": "AMD Device 14e8", "Memory": "4 x 4GB DRAM-6400MT\/s K3LKBKB0BM-MGCP", "Disk": "1024GB Micron_3400_MTFDKBA1T0TFH", "Graphics": "AMD Phoenix1 512MB (2700\/800MHz)", "Audio": "AMD Rembrandt Radeon HD Audio", "Network": "MEDIATEK MT7922 802.11ax PCI" }, "software": { "OS": "Ubuntu 23.10", "Kernel": "6.7.0-060700-generic (x86_64)", "Desktop": "GNOME Shell 45.2", "Display Server": "X Server + Wayland", "OpenGL": "4.6 Mesa 24.1~git2401230600.42fc83~oibaf~m (git-42fc83a 2024-01-23 mantic-oibaf-ppa) (LLVM 16.0.6 DRM 3.56)", "Compiler": "GCC 13.2.0", "File-System": "ext4", "Screen Resolution": "3200x2000" }, "user": "phoronix", "timestamp": "2024-02-16 20:45:16", "client_version": "10.8.4", "data": { "compiler-configuration": "--build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=\/build\/gcc-13-XYspKM\/gcc-13-13.2.0\/debian\/tmp-nvptx\/usr,amdgcn-amdhsa=\/build\/gcc-13-XYspKM\/gcc-13-13.2.0\/debian\/tmp-gcn\/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v", "cpu-scaling-governor": "amd-pstate-epp powersave (EPP: performance)", "cpu-microcode": "0xa704101", "kernel-extra-details": "Transparent Huge Pages: madvise", "security": "gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Vulnerable: Safe RET no microcode + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy\/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced \/ Automatic IBRS IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected" } }, "b": { "identifier": "b", "hardware": { "Processor": "AMD Ryzen 7 7840U @ 5.29GHz (8 Cores \/ 16 Threads)", "Motherboard": "PHX Swift SFE16-43 Ray_PEU (V1.04 BIOS)", "Chipset": "AMD Device 14e8", "Memory": "4 x 4GB DRAM-6400MT\/s K3LKBKB0BM-MGCP", "Disk": "1024GB Micron_3400_MTFDKBA1T0TFH", "Graphics": "AMD Phoenix1 512MB (2700\/800MHz)", "Audio": "AMD Rembrandt Radeon HD Audio", "Network": "MEDIATEK MT7922 802.11ax PCI" }, "software": { "OS": "Ubuntu 23.10", "Kernel": "6.7.0-060700-generic (x86_64)", "Desktop": "GNOME Shell 45.2", "Display Server": "X Server + Wayland", "OpenGL": "4.6 Mesa 24.1~git2401230600.42fc83~oibaf~m (git-42fc83a 2024-01-23 mantic-oibaf-ppa) (LLVM 16.0.6 DRM 3.56)", "Compiler": "GCC 13.2.0", "File-System": "ext4", "Screen Resolution": "3200x2000" }, "user": "phoronix", "timestamp": "2024-02-16 21:56:04", "client_version": "10.8.4", "data": { "compiler-configuration": "--build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=\/build\/gcc-13-XYspKM\/gcc-13-13.2.0\/debian\/tmp-nvptx\/usr,amdgcn-amdhsa=\/build\/gcc-13-XYspKM\/gcc-13-13.2.0\/debian\/tmp-gcn\/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v", "cpu-scaling-governor": "amd-pstate-epp powersave (EPP: performance)", "cpu-microcode": "0xa704101", "kernel-extra-details": "Transparent Huge Pages: madvise", "security": "gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Vulnerable: Safe RET no microcode + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy\/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced \/ Automatic IBRS IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected" } }, "c": { "identifier": "c", "hardware": { "Processor": "AMD Ryzen 7 7840U @ 5.29GHz (8 Cores \/ 16 Threads)", "Motherboard": "PHX Swift SFE16-43 Ray_PEU (V1.04 BIOS)", "Chipset": "AMD Device 14e8", "Memory": "4 x 4GB DRAM-6400MT\/s K3LKBKB0BM-MGCP", "Disk": "1024GB Micron_3400_MTFDKBA1T0TFH", "Graphics": "AMD Phoenix1 512MB (2700\/800MHz)", "Audio": "AMD Rembrandt Radeon HD Audio", "Network": "MEDIATEK MT7922 802.11ax PCI" }, "software": { "OS": "Ubuntu 23.10", "Kernel": "6.7.0-060700-generic (x86_64)", "Desktop": "GNOME Shell 45.2", "Display Server": "X Server + Wayland", "OpenGL": "4.6 Mesa 24.1~git2401230600.42fc83~oibaf~m (git-42fc83a 2024-01-23 mantic-oibaf-ppa) (LLVM 16.0.6 DRM 3.56)", "Compiler": "GCC 13.2.0", "File-System": "ext4", "Screen Resolution": "3200x2000" }, "user": "phoronix", "timestamp": "2024-02-16 22:32:28", "client_version": "10.8.4", "data": { "compiler-configuration": "--build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=\/build\/gcc-13-XYspKM\/gcc-13-13.2.0\/debian\/tmp-nvptx\/usr,amdgcn-amdhsa=\/build\/gcc-13-XYspKM\/gcc-13-13.2.0\/debian\/tmp-gcn\/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v", "cpu-scaling-governor": "amd-pstate-epp powersave (EPP: performance)", "cpu-microcode": "0xa704101", "kernel-extra-details": "Transparent Huge Pages: madvise", "security": "gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Vulnerable: Safe RET no microcode + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy\/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced \/ Automatic IBRS IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected" } } }, "results": { "002c19bce00295e60ebc4527d7b511932613c1bd": { "identifier": "pts\/gromacs-1.9.0", "title": "GROMACS", "app_version": "2024", "arguments": "mpi-build water-cut1.0_GMX50_bare\/1536", "description": "Implementation: MPI CPU - Input: water_GMX50_bare", "scale": "Ns Per Day", "proportion": "HIB", "display_format": "BAR_GRAPH", "results": { "a": { "value": 0.8080000000000000515143483426072634756565093994140625, "raw_values": [ 0.82199999999999995292654375589336268603801727294921875, 0.80300000000000004707345624410663731396198272705078125, 0.8000000000000000444089209850062616169452667236328125 ], "test_run_times": [ 216.210000000000007958078640513122081756591796875, 218.30000000000001136868377216160297393798828125, 220.759999999999990905052982270717620849609375 ], "details": { "compiler-options": { "compiler-type": "CXX", "compiler": "g++", "compiler-options": "-O3 -lm" } } }, "b": { "value": 0.82799999999999995825561427409411408007144927978515625, "test_run_times": [ 212.18999999999999772626324556767940521240234375 ], "details": { "compiler-options": { "compiler-type": "CXX", "compiler": "g++", "compiler-options": "-O3 -lm" } } }, "c": { "value": 0.8890000000000000124344978758017532527446746826171875, "test_run_times": [ 196.849999999999994315658113919198513031005859375 ], "details": { "compiler-options": { "compiler-type": "CXX", "compiler": "g++", "compiler-options": "-O3 -lm" } } } } }, "cb3fb067872f0ca9cc8da9180102ca3727d399f2": { "identifier": "pts\/namd-1.3.1", "title": "NAMD", "app_version": "3.0b6", "arguments": "..\/f1atpase\/f1atpase.namd", "description": "Input: ATPase with 327,506 Atoms", "scale": "ns\/day", "proportion": "HIB", "display_format": "BAR_GRAPH", "results": { "a": { "value": 0.82098999999999999754862756162765435874462127685546875, "raw_values": [ 0.9251720820072499851249858693336136639118194580078125, 0.88368106183116001961508345630136318504810333251953125, 0.88117372339957000804133713245391845703125, 0.83429973052118999721216141551849432289600372314453125, 0.8430068367854499644664656443637795746326446533203125, 0.81902094236550004868746555075631476938724517822265625, 0.7818608287724799765783245675265789031982421875, 0.77266019177426004116426838663755916059017181396484375, 0.79142725992053997163822032234747894108295440673828125, 0.76591963971139997990889014545246027410030364990234375, 0.79607693287478997756778653638320975005626678466796875, 0.757633154026819966020411811769008636474609375 ], "test_run_times": [ 86.9800000000000039790393202565610408782958984375, 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50.38000000000000255795384873636066913604736328125 ] } } }, "7f69eb040a48b72e4c333b43507f955ff1fbb4cd": { "identifier": "pts\/namd-1.3.1", "title": "NAMD", "app_version": "3.0b6", "arguments": "..\/stmv\/stmv.namd", "description": "Input: STMV with 1,066,628 Atoms", "scale": "ns\/day", "proportion": "HIB", "display_format": "BAR_GRAPH", "results": { "a": { "value": 0.209660000000000013020695632803835906088352203369140625, "raw_values": [ 0.223980719739650002697572972465422935783863067626953125, 0.213455828518129997473096182147855870425701141357421875, 0.2120265711699000077405941055985749699175357818603515625, 0.1964296938839699968593066614630515687167644500732421875, 0.2030477466776300088380224906359217129647731781005859375, 0.2053173076330800095323780851686024107038974761962890625, 0.2062225595106799980182898934799595735967159271240234375, 0.2042821626943999990810851841160911135375499725341796875, 0.215644583223709995767336522476398386061191558837890625, 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