Parallel Bioindormatic

Intel Core i7-3615QM testing with a Apple Mac-C3EC7CD22292981F (425.0.0.0.0 BIOS) and Intel HD 4000 981MB on Gentoo 2.8 via the Phoronix Test Suite.

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Bioinformatics 2 Tests
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  Test
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Musl Stable cmang 11.1.0
April 29 2021
  30 Minutes
Gentoo HDD GLIBC GCC 11.1
May 16 2021
  5 Minutes
Gentoo HDD GLIBC Clang 12.0
May 16 2021
  6 Minutes
Ubuntu 21.04 miti GCC 10.3
June 21 2021
  3 Minutes
Gentoo Glibc Clang 13 mold 1.01
January 23 2022
  4 Minutes
Gentoo Glibc GCC 11.2
January 23 2022
  4 Minutes
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{ "title": "Parallel Bioindormatic", "last_modified": "2022-01-23 14:46:06", "description": "Intel Core i7-3615QM testing with a Apple Mac-C3EC7CD22292981F (425.0.0.0.0 BIOS) and Intel HD 4000 981MB on Gentoo 2.8 via the Phoronix Test Suite.", "reference_id": "2201234-NE-2106214IB85", "systems": { "Musl Stable cmang 11.1.0": { "identifier": "Musl Stable cmang 11.1.0", "hardware": { "Processor": "Intel Core i7-3615QM (8 Cores)", "Motherboard": "Parallels Software Virtual (16.1.2 49151 BIOS)", "Memory": "4096MB", "Disk": "69GB Gentoo-Musl-0 SS", "Graphics": "virtio_gpudrmfb" }, "software": { "OS": "Gentoo\/Linux", "Kernel": "5.10.27-gentoo-x86_64-gcc (x86_64)", "Compiler": "GCC 10.2.0", "File-System": "ext4", "Screen Resolution": "1008x759", "System Layer": "Parallels Virtualization" }, "user": "tux", "timestamp": "2021-04-29 11:42:59", "data": { "compiler-configuration": "--bindir=\/usr\/x86_64-gentoo-linux-musl\/gcc-bin\/10.2.0 --build=x86_64-gentoo-linux-musl --datadir=\/usr\/share\/gcc-data\/x86_64-gentoo-linux-musl\/10.2.0 --disable-fixed-point --disable-libada --disable-libsanitizer --disable-libssp --disable-libstdcxx-pch --disable-libvtv --disable-multilib --disable-nls --disable-systemtap --disable-vtable-verify --disable-werror --enable-__cxa_atexit --enable-checking=release --enable-default-pie --enable-default-ssp --enable-esp --enable-languages=c,c++,fortran --enable-libgomp --enable-libstdcxx-time --enable-lto --enable-obsolete --enable-secureplt --enable-shared --enable-targets=all --enable-threads=posix --host=x86_64-gentoo-linux-musl --includedir=\/usr\/lib\/gcc\/x86_64-gentoo-linux-musl\/10.2.0\/include --mandir=\/usr\/share\/gcc-data\/x86_64-gentoo-linux-musl\/10.2.0\/man --with-multilib-list=m64 --with-python-dir=\/share\/gcc-data\/x86_64-gentoo-linux-musl\/10.2.0\/python --with-zstd --without-isl", "cpu-microcode": "0x21", "kernel-extra-details": "Transparent Huge Pages: always", "security": "itlb_multihit: KVM: Mitigation of VMX unsupported + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy\/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline STIBP: disabled RSB filling + srbds: Unknown: Dependent on hypervisor status + tsx_async_abort: Not affected" } }, "Gentoo HDD GLIBC GCC 11.1": { "identifier": "Gentoo HDD GLIBC GCC 11.1", "hardware": { "Processor": "Intel Core i7-3615QM @ 3.30GHz (4 Cores \/ 8 Threads)", "Motherboard": "Apple Mac-C3EC7CD22292981F (421.0.0.0.0 BIOS)", "Chipset": "Intel 3rd Gen Core DRAM", "Memory": "8GB", "Disk": "251GB APPLE SSD SM256E + 500GB Generic", "Graphics": "NVIDIA GeForce GT 650M 1GB", "Audio": "Cirrus Logic CS4206", "Monitor": "Color LCD", "Network": "Broadcom NetXtreme BCM57786 PCIe + Broadcom BCM4331 802.11a\/b\/g\/n" }, "software": { "OS": "Gentoo\/Linux", "Kernel": "5.12.4-gentoo-x86_64-v2 (x86_64)", "Desktop": "MATE 1.24.1", "Display Server": "X Server 1.20.11", "Display Driver": "NVIDIA 465.27", "OpenGL": "4.6.0", "Compiler": "GCC 11.1.0 + Clang 12.0.0 + LLVM 12.0.0", "File-System": "btrfs", "Screen Resolution": "2880x1800" }, "user": "tux", "timestamp": "2021-05-16 11:49:06", "data": { "cpu-scaling-governor": "intel_cpufreq performance", "cpu-microcode": "0x21", "kernel-parameters": "i915.fastboot=1", "kernel-extra-details": "Transparent Huge Pages: always", "security": "itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy\/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected" } }, "Gentoo HDD GLIBC Clang 12.0": { "identifier": "Gentoo HDD GLIBC Clang 12.0", "hardware": { "Processor": "Intel Core i7-3615QM @ 3.30GHz (4 Cores \/ 8 Threads)", "Motherboard": "Apple Mac-C3EC7CD22292981F (421.0.0.0.0 BIOS)", "Chipset": "Intel 3rd Gen Core DRAM", "Memory": "8GB", "Disk": "251GB APPLE SSD SM256E + 500GB Generic", "Graphics": "NVIDIA GeForce GT 650M 1GB", "Audio": "Cirrus Logic CS4206", "Monitor": "Color LCD", "Network": "Broadcom NetXtreme BCM57786 PCIe + Broadcom BCM4331 802.11a\/b\/g\/n" }, "software": { "OS": "Gentoo\/Linux", "Kernel": "5.12.4-gentoo-x86_64-v2 (x86_64)", "Desktop": "MATE 1.24.1", "Display Server": "X Server 1.20.11", "Display Driver": "NVIDIA 465.27", "OpenGL": "4.6.0", "Compiler": "Clang 12.0.0 + GCC 11.1.0 + LLVM 12.0.0", "File-System": "btrfs", "Screen Resolution": "2880x1800" }, "user": "tux", "timestamp": "2021-05-16 12:13:40", "data": { "compiler-configuration": "Optimized build; Default target: x86_64-pc-linux-gnu; Host CPU: ivybridge", "cpu-scaling-governor": "intel_cpufreq performance", "cpu-microcode": "0x21", "kernel-parameters": "i915.fastboot=1", "kernel-extra-details": "Transparent Huge Pages: always", "security": "itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy\/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected" } }, "Ubuntu 21.04 miti GCC 10.3": { "identifier": "Ubuntu 21.04 miti GCC 10.3", "hardware": { "Processor": "Intel Core i7-3615QM @ 3.30GHz (4 Cores \/ 8 Threads)", "Motherboard": "Apple Mac-C3EC7CD22292981F (421.0.0.0.0 BIOS)", "Chipset": "Intel 3rd Gen Core DRAM", "Memory": "8GB", "Disk": "251GB APPLE SSD SM256E", "Graphics": "NVIDIA GeForce GT 650M 1GB", "Audio": "Cirrus Logic CS4206", "Monitor": "Color LCD", "Network": "Broadcom NetXtreme BCM57786 PCIe + Broadcom NetXtreme BCM57762 PCIe + Broadcom BCM4331 802.11a\/b\/g\/n" }, "software": { "OS": "Ubuntu 21.04", "Kernel": "5.11.0-18-generic (x86_64)", "Desktop": "MATE 1.24.1", "Display Server": "X Server 1.20.11", "Display Driver": "NVIDIA 460.80", "OpenGL": "4.6.0", "OpenCL": "OpenCL 1.2 CUDA 11.2.162", "Vulkan": "1.2.155", "Compiler": "GCC 10.3.0 + Clang 12.0.0-1ubuntu1 + LLVM 12.0.0", "File-System": "zfs", "Screen Resolution": "2880x1800" }, "user": "tux", "timestamp": "2021-06-21 13:43:51", "data": { "compiler-configuration": "--build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=\/build\/gcc-10-gDeRY6\/gcc-10-10.3.0\/debian\/tmp-nvptx\/usr,amdgcn-amdhsa=\/build\/gcc-10-gDeRY6\/gcc-10-10.3.0\/debian\/tmp-gcn\/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v", "cpu-scaling-governor": "intel_cpufreq performance", "cpu-microcode": "0x21", "cpu-thermald": "2.4.3", "kernel-extra-details": "Transparent Huge Pages: madvise", "security": "itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy\/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected" } }, "Gentoo Glibc Clang 13 mold 1.01": { "identifier": "Gentoo Glibc Clang 13 mold 1.01", "hardware": { "Processor": "Intel Core i7-3615QM @ 3.30GHz (4 Cores \/ 8 Threads)", "Motherboard": "Apple Mac-C3EC7CD22292981F (425.0.0.0.0 BIOS)", "Chipset": "Intel 3rd Gen Core DRAM", "Memory": "8GB", "Disk": "251GB APPLE SSD SM256E", "Graphics": "Intel HD 4000 981MB", "Audio": "Cirrus Logic CS4206", "Monitor": "Color LCD", "Network": "Broadcom NetXtreme BCM57786 PCIe + Broadcom BCM4331 802.11a\/b\/g\/n" }, "software": { "OS": "Gentoo 2.8", "Kernel": "5.16.2-gentoo (x86_64)", "Desktop": "KDE Plasma 5.23.5", "Display Server": "X Server 1.21.1.3 + Wayland", "Display Driver": "NVIDIA", "OpenGL": "4.2 Mesa 21.3.4", "Compiler": "Clang 13.0.0 + GCC 11.2.1 20220115 + LLVM 13.0.0", "File-System": "btrfs", "Screen Resolution": "2880x1800" }, "user": "tux", "timestamp": "2022-01-23 14:34:55", "client_version": "10.8.0", "data": { "compiler-configuration": "Optimized build; Default target: x86_64-pc-linux-gnu; Host CPU: ivybridge", "cpu-scaling-governor": "intel_cpufreq performance", "cpu-microcode": "0x21", "kernel-parameters": "i915.enable_hd_vgaarb=1", "kernel-extra-details": "Transparent Huge Pages: always", "environment-variables": "LDFLAGS=-fuse-ld=mold", "security": "itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Vulnerable; SMT vulnerable + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Vulnerable: __user pointer sanitization and usercopy barriers only; no swapgs barriers + spectre_v2: Vulnerable IBPB: disabled STIBP: disabled + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected" } }, "Gentoo Glibc GCC 11.2": { "identifier": "Gentoo Glibc GCC 11.2", "hardware": { "Processor": "Intel Core i7-3615QM @ 3.30GHz (4 Cores \/ 8 Threads)", "Motherboard": "Apple Mac-C3EC7CD22292981F (425.0.0.0.0 BIOS)", "Chipset": "Intel 3rd Gen Core DRAM", "Memory": "8GB", "Disk": "251GB APPLE SSD SM256E", "Graphics": "Intel HD 4000 981MB", "Audio": "Cirrus Logic CS4206", "Monitor": "Color LCD", "Network": "Broadcom NetXtreme BCM57786 PCIe + Broadcom BCM4331 802.11a\/b\/g\/n" }, "software": { "OS": "Gentoo 2.8", "Kernel": "5.16.2-gentoo (x86_64)", "Desktop": "KDE Plasma 5.23.5", "Display Server": "X Server 1.21.1.3 + Wayland", "Display Driver": "NVIDIA", "OpenGL": "4.2 Mesa 21.3.4", "Compiler": "GCC 11.2.1 20220115 + Clang 13.0.0 + LLVM 13.0.0", "File-System": "btrfs", "Screen Resolution": "2880x1800" }, "user": "tux", "timestamp": "2022-01-23 14:41:31", "client_version": "10.8.0", "data": { "cpu-scaling-governor": "intel_cpufreq performance", "cpu-microcode": "0x21", "kernel-parameters": "i915.enable_hd_vgaarb=1", "kernel-extra-details": "Transparent Huge Pages: always", "security": "itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Vulnerable; SMT vulnerable + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Vulnerable: __user pointer sanitization and usercopy barriers only; no swapgs barriers + spectre_v2: Vulnerable IBPB: disabled STIBP: disabled + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected" } } }, "results": { "0b7cbbbbae9796f001d2b7ad2d2bad8fe672665d": { "identifier": "pts\/mafft-1.6.2", "title": "Timed MAFFT Alignment", "app_version": "7.471", "description": "Multiple Sequence Alignment - LSU RNA", "scale": "Seconds", "proportion": "LIB", "display_format": "BAR_GRAPH", "results": { "Musl Stable cmang 11.1.0": { "value": 317.08800000000002228262019343674182891845703125, "raw_values": [ 306.5520000000000209183781407773494720458984375, 324.69400000000001682565198279917240142822265625, 317.03100000000000591171556152403354644775390625, 324.56099999999997862687450833618640899658203125, 312.6019999999999754436430521309375762939453125 ], "test_run_times": [ 306.55000000000001136868377216160297393798828125, 324.68999999999999772626324556767940521240234375, 317.029999999999972715158946812152862548828125, 324.56000000000000227373675443232059478759765625, 312.6000000000000227373675443232059478759765625 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "gcc", "compiler-options": "-std=c99 -O3 -lm -lpthread" } } }, "Gentoo HDD GLIBC GCC 11.1": { "value": 20.367000000000000881072992342524230480194091796875, "test_run_times": [ 23.910000000000000142108547152020037174224853515625, 23.4200000000000017053025658242404460906982421875, 20.3299999999999982946974341757595539093017578125, 24.3900000000000005684341886080801486968994140625, 28.910000000000000142108547152020037174224853515625 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "gcc", "compiler-options": "-std=c99 -O3 -lm -lpthread" } } }, "Gentoo HDD GLIBC Clang 12.0": { "value": 22.126999999999998891553332214243710041046142578125, "raw_values": [ 21.7469999999999998863131622783839702606201171875, 22.507000000000001449507180950604379177093505859375 ], "test_run_times": [ 21.739999999999998436805981327779591083526611328125, 23.67999999999999971578290569595992565155029296875, 23.8599999999999994315658113919198513031005859375, 29, 22.510000000000001563194018672220408916473388671875 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "clang", "compiler-options": "-std=c99 -O3 -lm -lpthread" } } }, "Gentoo Glibc Clang 13 mold 1.01": { "test_run_times": [ 13.4000000000000003552713678800500929355621337890625, 13.3499999999999996447286321199499070644378662109375, 13.4700000000000006394884621840901672840118408203125 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "clang", "compiler-options": "-std=c99 -O3 -fuse-ld=mold -lm -lpthread" }, "error": "The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status." } }, "Gentoo Glibc GCC 11.2": { "test_run_times": [ 12.5600000000000004973799150320701301097869873046875, 12.8100000000000004973799150320701301097869873046875, 12.3100000000000004973799150320701301097869873046875 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "gcc", "compiler-options": "-std=c99 -O3 -lm -lpthread" }, "error": "The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status." } } } }, "cb1efaf56752a153fcd111641c8f1fa20d3381ba": { "identifier": "pts\/himeno-1.3.0", "title": "Himeno Benchmark", "app_version": "3.0", "description": "Poisson Pressure Solver", "scale": "MFLOPS", "proportion": "HIB", "display_format": "BAR_GRAPH", "results": { "Musl Stable cmang 11.1.0": { "value": 2205.42038300000012895907275378704071044921875, "raw_values": [ 2215.51054100000010294024832546710968017578125, 2167.21155200000021068262867629528045654296875, 2233.5390550000001894659362733364105224609375 ], "test_run_times": [ 58.1700000000000017053025658242404460906982421875, 54.89999999999999857891452847979962825775146484375, 59.47999999999999687361196265555918216705322265625 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "gcc", "compiler-options": "-O3" } } }, "Gentoo HDD GLIBC GCC 11.1": { "value": 2549.61084600000003774766810238361358642578125, "raw_values": [ 2550.65726899999981469591148197650909423828125, 2543.4081059999998615239746868610382080078125, 2554.76716299999998227576725184917449951171875 ], "test_run_times": [ 55.14999999999999857891452847979962825775146484375, 52.7000000000000028421709430404007434844970703125, 51.75999999999999801048033987171947956085205078125 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "gcc", "compiler-options": "-O3" } } }, "Gentoo HDD GLIBC Clang 12.0": { "value": 2167.75567000000000916770659387111663818359375, "raw_values": [ 2149.3396579999998721177689731121063232421875, 2188.96233399999982793815433979034423828125, 2164.9650190000002112356014549732208251953125 ], "test_run_times": [ 59.3900000000000005684341886080801486968994140625, 61.32000000000000028421709430404007434844970703125, 61.42999999999999971578290569595992565155029296875 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "clang", "compiler-options": "-O3" } } }, "Ubuntu 21.04 miti GCC 10.3": { "value": 2523.5097059999998236889950931072235107421875, "raw_values": [ 2520.50527700000020558945834636688232421875, 2524.28733099999999467399902641773223876953125, 2525.73650899999984176247380673885345458984375 ], "test_run_times": [ 59.93999999999999772626324556767940521240234375, 60.31000000000000227373675443232059478759765625, 59.63000000000000255795384873636066913604736328125 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "gcc", "compiler-options": "-O3" } } }, "Gentoo Glibc Clang 13 mold 1.01": { "value": 2401.9073109999999360297806560993194580078125, "raw_values": [ 2346.21074300000009316136129200458526611328125, 2412.748770000000149593688547611236572265625, 2446.76242099999990387004800140857696533203125 ], "test_run_times": [ 63.82000000000000028421709430404007434844970703125, 61.85000000000000142108547152020037174224853515625, 61.14999999999999857891452847979962825775146484375 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "clang", "compiler-options": "-O3" } } }, "Gentoo Glibc GCC 11.2": { "value": 2407.33076500000015585101209580898284912109375, "raw_values": [ 2416.82016299999986586044542491436004638671875, 2382.417405000000144354999065399169921875, 2422.75472799999988637864589691162109375 ], "test_run_times": [ 60.159999999999996589394868351519107818603515625, 60.8299999999999982946974341757595539093017578125, 60.21000000000000085265128291212022304534912109375 ], "details": { "compiler-options": { "compiler-type": "CC", "compiler": "gcc", "compiler-options": "-O3" } } } } } } }