hmmer 5900x

AMD Ryzen 9 5900X 12-Core testing with a ASUS ROG CROSSHAIR VIII HERO (3402 BIOS) and NVIDIA GeForce RTX 3090 24GB on Ubuntu 21.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2105055-PTS-HMMER59003&sor.

hmmer 5900xProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLOpenCLVulkanCompilerFile-SystemScreen Resolution1234AMD Ryzen 9 5900X 12-Core @ 3.70GHz (12 Cores / 24 Threads)ASUS ROG CROSSHAIR VIII HERO (3402 BIOS)AMD Starship/Matisse16GB1000GB Sabrent Rocket 4.0 PlusNVIDIA GeForce RTX 3090 24GBNVIDIA GA102 HD AudioASUS VP28URealtek RTL8125 2.5GbE + Intel I211Ubuntu 21.045.11.0-16-generic (x86_64)GNOME Shell 3.38.4X Server 1.20.11NVIDIA 465.274.6.0OpenCL 3.0 CUDA 11.3.1011.2.168GCC 10.3.0ext43840x2160OpenBenchmarking.orgKernel Details- Transparent Huge Pages: madviseCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-gDeRY6/gcc-10-10.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-gDeRY6/gcc-10-10.3.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0xa201009 Security Details- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

hmmer 5900xhmmer: Pfam Database SearchDifferenceStandard ErrorStandard Deviation123497.8841.00x0.240.42%98.0091.00x0.060.11%98.0001.00x0.080.14%97.4431.01x0.080.14%OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search413220406080100SE +/- 0.08, N = 3SE +/- 0.24, N = 3SE +/- 0.08, N = 3SE +/- 0.06, N = 397.4497.8898.0098.011. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Phoronix Test Suite v10.8.4