gromacs + mafft AMD Ryzen 7 1700 Eight-Core testing with a MSI B350 TOMAHAWK (MS-7A34) v1.0 (1.H0 BIOS) and AMD Radeon RX 470/480/570/570X/580/580X/590 8GB on Ubuntu 19.10 via the Phoronix Test Suite.
HTML result view exported from: https://openbenchmarking.org/result/2009263-FI-GROMACSMA76 .
gromacs + mafft Processor Motherboard Chipset Memory Disk Graphics Audio Monitor Network OS Kernel Desktop Display Server Display Driver OpenGL Vulkan Compiler File-System Screen Resolution 1 2 3 AMD Ryzen 7 1700 Eight-Core @ 3.00GHz (8 Cores / 16 Threads) MSI B350 TOMAHAWK (MS-7A34) v1.0 (1.H0 BIOS) AMD 17h 16GB 120GB Samsung SSD 840 AMD Radeon RX 470/480/570/570X/580/580X/590 8GB (1266/2000MHz) AMD Ellesmere HDMI Audio VA2431 Realtek RTL8111/8168/8411 Ubuntu 19.10 5.9.0-050900rc2-generic (x86_64) 20200823 GNOME Shell 3.34.1 X Server 1.20.5 amdgpu 19.0.1 4.5 Mesa 19.2.8 (LLVM 9.0.0) 1.1.107 GCC 9.2.1 20191008 ext4 1920x1080 OpenBenchmarking.org Compiler Details - --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8001137 Security Details - itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected
gromacs + mafft mafft: Multiple Sequence Alignment - LSU RNA gromacs: Water Benchmark 1 2 3 14.740 0.533 14.685 0.534 14.703 0.534 OpenBenchmarking.org
Timed MAFFT Alignment Multiple Sequence Alignment - LSU RNA OpenBenchmarking.org Seconds, Fewer Is Better Timed MAFFT Alignment 7.471 Multiple Sequence Alignment - LSU RNA 1 2 3 4 8 12 16 20 SE +/- 0.04, N = 3 SE +/- 0.03, N = 3 SE +/- 0.04, N = 3 14.74 14.69 14.70 1. (CC) gcc options: -std=c99 -O3 -lm -lpthread
GROMACS Water Benchmark OpenBenchmarking.org Ns Per Day, More Is Better GROMACS 2020.3 Water Benchmark 1 2 3 0.1202 0.2404 0.3606 0.4808 0.601 SE +/- 0.000, N = 3 SE +/- 0.000, N = 3 SE +/- 0.000, N = 3 0.533 0.534 0.534 1. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm
Phoronix Test Suite v10.8.4