NAMD AMD Ryzen Threadripper 3990X 64-Core testing with a MSI Creator TRX40 (MS-7C59) v1.0 (1.30 BIOS) and NVIDIA GeForce GT 710 1GB on CentOS Linux 7 via the Phoronix Test Suite.
HTML result view exported from: https://openbenchmarking.org/result/2003269-VE-NAMD0870425&sor .
NAMD Processor Motherboard Chipset Memory Disk Graphics Audio Monitor Network OS Kernel Display Server Compiler File-System Screen Resolution Clang 10 w/ flags GCC 9.2.0 w/ flags GCC 9.2.0 w/flags wo/LLVM ICC w/flags AMD Ryzen Threadripper 3990X 64-Core @ 2.90GHz (64 Cores / 128 Threads) MSI Creator TRX40 (MS-7C59) v1.0 (1.30 BIOS) AMD Starship/Matisse 8 x 16384 MB DDR4-2933MT/s Kingston 500GB Samsung SSD 860 NVIDIA GeForce GT 710 1GB NVIDIA GK208 HDMI/DP HP V190 Aquantia AQC107 NBase-T/IEEE + Intel I211 + 2 x Intel 82599ES 10-Gigabit SFI/SFP+ + Intel Device 2723 CentOS Linux 7 5.5.10-1.el7.elrepo.x86_64 (x86_64) X Server Clang 10.0.0 + GCC 9.2.0 + LLVM 10.0.0 xfs 1366x768 GCC 9.2.0 + Clang 10.0.0 + LLVM 10.0.0 GCC 9.2.0 ICC + GCC 9.2.0 + Intel oneAPI DPC++ Compiler 2021.1-beta03 (2019.10.0.1121) OpenBenchmarking.org Processor Details - Scaling Governor: acpi-cpufreq performance - CPU Microcode: 0x8301025 Security Details - SELinux + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected
NAMD namd: ATPase Simulation - 327,506 Atoms Difference Standard Deviation Clang 10 w/ flags GCC 9.2.0 w/ flags GCC 9.2.0 w/flags wo/LLVM ICC w/flags 0.37655 1.00x 0.76% 0.37582 1.00x 0.88% 0.37492 1.01x 0.57% 0.37721 1.00x 0.85% OpenBenchmarking.org
NAMD ATPase Simulation - 327,506 Atoms OpenBenchmarking.org days/ns, Fewer Is Better NAMD 2.13 ATPase Simulation - 327,506 Atoms GCC 9.2.0 w/flags wo/LLVM GCC 9.2.0 w/ flags Clang 10 w/ flags ICC w/flags 0.0849 0.1698 0.2547 0.3396 0.4245 SE +/- 0.00087, N = 6 SE +/- 0.00135, N = 6 SE +/- 0.00116, N = 6 SE +/- 0.00131, N = 6 0.37492 0.37582 0.37655 0.37721
Phoronix Test Suite v10.8.4