scipbs-vm-01

Sci testing on scipbs-vm-01

HTML result view exported from: https://openbenchmarking.org/result/2002246-HU-2002247HU34.

scipbs-vm-01ProcessorMotherboardMemoryDiskChipsetGraphicsAudioNetworkOSKernelCompilerFile-SystemSystem LayerScreen Resolutionscipbs-vm-01-24-02-2020odin-procesorIntel Xeon X5690 (6 Cores)oVirt Node (1.11.0-2.el7 BIOS)16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 3616 MB RAM64GB QEMU HDDCentOS Linux 73.10.0-1062.12.1.el7.x86_64 (x86_64)GCC 4.8.5 20150623xfsKVM2 x Intel Xeon X5690 @ 3.47GHz (12 Cores)Supermicro X8DTN v2.0 (2.1c BIOS)Intel 5520 I/O + ICH10R16384 MB + 16384 MB + 8192 MB + 16384 MB + 16384 MB + 8192 MB + 16384 MB + 16384 MB + 8192 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB DDR3-800MT/s120GB Samsung SSD 840AMD ES1000NVIDIA GK208 HDMI/DPAquantia AQC107 NBase-T/IEEE + 2 x Broadcom NetXtreme II BCM57711 10-Gigabit PCIe + 2 x Intel 825761024x768OpenBenchmarking.orgCompiler Details- --build=x86_64-redhat-linux --disable-libgcj --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-linker-hash-style=gnu --with-tune=genericProcessor Details- scipbs-vm-01-24-02-2020: CPU Microcode: 0x1- odin-procesor: Scaling Governor: acpi-cpufreq performance - CPU Microcode: 0x1fSecurity Details- scipbs-vm-01-24-02-2020: SELinux + itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full retpoline IBPB + tsx_async_abort: Not affected - odin-procesor: SELinux + itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT disabled + mds: Vulnerable: Clear buffers attempted no microcode; SMT disabled + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full retpoline IBPB + tsx_async_abort: Not affected

scipbs-vm-01ffte: N=256, 1D Complex FFT Routinefftw: Stock - 1D FFT Size 4096fftw: Float + SSE - 1D FFT Size 4096hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentscipbs-vm-01-24-02-2020odin-procesor5126.784717.81597212.1695.6464760.5162717.9253.765OpenBenchmarking.org

FFTE

Test: N=256, 1D Complex FFT Routine

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 6.0Test: N=256, 1D Complex FFT Routinescipbs-vm-01-24-02-202011002200330044005500SE +/- 6.42, N = 35126.781. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp

FFTW

Build: Stock - Size: 1D FFT Size 4096

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096scipbs-vm-01-24-02-2020odin-procesor10002000300040005000SE +/- 7.45, N = 3SE +/- 12.70, N = 34717.84760.51. (CC) gcc options: -std=gnu99 -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

FFTW

Build: Float + SSE - Size: 1D FFT Size 4096

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096scipbs-vm-01-24-02-2020odin-procesor3K6K9K12K15KSE +/- 55.05, N = 3SE +/- 64.49, N = 315972162711. (CC) gcc options: -std=gnu99 -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchscipbs-vm-01-24-02-2020odin-procesor3691215SE +/- 0.027, N = 3SE +/- 0.030, N = 312.1697.9251. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentscipbs-vm-01-24-02-2020odin-procesor1.27042.54083.81125.08166.352SE +/- 0.011, N = 3SE +/- 0.129, N = 125.6463.7651. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Phoronix Test Suite v10.8.4