pts-computational-biology

AMD Phenom II X6 1055T testing with a ASRock K10N78D and NVIDIA GeForce 210 on Debian testing via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1211266-SU-PTSCOMPUT74.

pts-computational-biologyProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionAMD Phenom II X6 1055TAMD Phenom II X6 1055T @ 2.20GHz (6 Cores)ASRock K10N78DNVIDIA MCP78S8192MB128GB M4-CT128M4SSD2NVIDIA GeForce 210 (405/405MHz)VIA VT1708SAL1715Intel 82574L Gigabit ConnectionDebian testing3.7.0-rc7 (x86_64)X Server 1.12.4nouveau 1.0.12.1 Mesa 8.0.4 Gallium 0.4GCC 4.7ext31280x1024OpenBenchmarking.org- --build=x86_64-linux-gnu --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,go,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-arch-32=i586 --with-tune=generic -v - Scaling Governor: ondemand

pts-computational-biologyhmmer: Pfam Database Searchmafft: Multiple Sequence AlignmentAMD Phenom II X6 1055T26.7013.89OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchAMD Phenom II X6 1055T61218243026.701. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentAMD Phenom II X6 1055T4812162013.891. (CC) gcc options: -O3 -lm -lpthread

Phoronix Test Suite v10.8.4