first_phoronix_hmmer_test

Intel Core i3 540 testing with a Gigabyte H55M-S2H (F1 BIOS) and ASUS NVIDIA GeForce GTS 250 512MB on LinuxMint 19.3 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2401297-NE-FIRSTPHOR39
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
1
January 29
  13 Minutes


first_phoronix_hmmer_testOpenBenchmarking.orgPhoronix Test SuiteIntel Core i3 540 @ 3.06GHz (2 Cores / 4 Threads)Gigabyte H55M-S2H (F1 BIOS)Intel Core DRAM2048MB160GB Seagate ST3160811ASASUS NVIDIA GeForce GTS 250 512MBRealtek ALC887Philips 170SRealtek RTL8111/8168/8411LinuxMint 19.35.4.0-150-generic (i686)Xfce 4.14X Server 1.20.8NVIDIA 340.1083.3.0 NVIDIA 340.108GCC 7.5.0ext41280x1024ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionFirst_phoronix_hmmer_test BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=i686-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-plugin --enable-shared --enable-targets=all --enable-threads=posix --host=i686-linux-gnu --program-prefix=i686-linux-gnu- --target=i686-linux-gnu --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x11- itlb_multihit: KVM: Vulnerable + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + retbleed: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search160120180240300SE +/- 1.18, N = 3253.321. (CC) gcc options: -O3 -msse2 -pthread -lhmmer -leasel -lm -lmpi