threadr1-molecular-ajaeg-ubu

ubu 20.04 vm hosted on ThreadR1

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16 x AMD Ryzen Threadripper 3960X 24-Core
December 04 2023
  2 Hours, 39 Minutes
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16 x AMD Ryzen Threadripper 3960X 24-Core

Processor: 16 x AMD Ryzen Threadripper 3960X 24-Core (31 Cores), Motherboard: Intel 440BX (6.00 BIOS), Chipset: Intel 440BX/ZX/DX, Memory: 16GB, Disk: 193GB VMware Virtual S, Graphics: VMware SVGA II, Audio: Ensoniq ES1371/ES1373, Network: Intel 82545EM + 4 x AMD 79c970

OS: Ubuntu 20.04, Kernel: 5.15.0-89-generic (x86_64), Desktop: GNOME Shell 3.36.9, Display Server: X Server 1.20.13, Display Driver: vmware 13.3.0, Compiler: GCC 9.4.0, File-System: ext4, Screen Resolution: 2558x1343, System Layer: VMware

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: CPU Microcode: 0xffffffff
Python Notes: Python 3.8.10
Security Notes: gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Mitigation of untrained return thunk; SMT disabled + spec_rstack_overflow: Mitigation of SMT disabled + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: disabled RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

threadr1-molecular-ajaeg-ubuOpenBenchmarking.orgPhoronix Test Suite16 x AMD Ryzen Threadripper 3960X 24-Core (31 Cores)Intel 440BX (6.00 BIOS)Intel 440BX/ZX/DX16GB193GB VMware Virtual SVMware SVGA IIEnsoniq ES1371/ES1373Intel 82545EM + 4 x AMD 79c970Ubuntu 20.045.15.0-89-generic (x86_64)GNOME Shell 3.36.9X Server 1.20.13vmware 13.3.0GCC 9.4.0ext42558x1343VMwareProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionSystem LayerThreadr1-molecular-ajaeg-ubu BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0xffffffff- Python 3.8.10- gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Mitigation of untrained return thunk; SMT disabled + spec_rstack_overflow: Mitigation of SMT disabled + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: disabled RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

threadr1-molecular-ajaeg-ubuminife: Smallcloverleaf: clover_bmcloverleaf: clover_bm16cloverleaf: clover_bm64_shortnamd: ATPase Simulation - 327,506 Atomsdolfyn: Computational Fluid Dynamics16 x AMD Ryzen Threadripper 3960X 24-Core5442.98317.472270.51249.312.0290722.877OpenBenchmarking.org

miniFE

MiniFE Finite Element is an application for unstructured implicit finite element codes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgCG Mflops, More Is BetterminiFE 2.2Problem Size: Small16 x AMD Ryzen Threadripper 3960X 24-Core12002400360048006000SE +/- 23.16, N = 35442.981. (CXX) g++ options: -O3 -fopenmp -pthread -lmpi_cxx -lmpi

CloverLeaf

CloverLeaf is a Lagrangian-Eulerian hydrodynamics benchmark. This test profile currently makes use of CloverLeaf's OpenMP version. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeaf 1.3Input: clover_bm16 x AMD Ryzen Threadripper 3960X 24-Core70140210280350SE +/- 4.92, N = 3317.471. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeaf 1.3Input: clover_bm1616 x AMD Ryzen Threadripper 3960X 24-Core5001000150020002500SE +/- 9.16, N = 32270.511. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeaf 1.3Input: clover_bm64_short16 x AMD Ryzen Threadripper 3960X 24-Core50100150200250SE +/- 0.10, N = 3249.311. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms16 x AMD Ryzen Threadripper 3960X 24-Core0.45650.9131.36951.8262.2825SE +/- 0.02370, N = 62.02907

Dolfyn

Dolfyn is a Computational Fluid Dynamics (CFD) code of modern numerical simulation techniques. The Dolfyn test profile measures the execution time of the bundled computational fluid dynamics demos that are bundled with Dolfyn. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamics16 x AMD Ryzen Threadripper 3960X 24-Core510152025SE +/- 0.03, N = 322.88

16 x AMD Ryzen Threadripper 3960X 24-Core

Processor: 16 x AMD Ryzen Threadripper 3960X 24-Core (31 Cores), Motherboard: Intel 440BX (6.00 BIOS), Chipset: Intel 440BX/ZX/DX, Memory: 16GB, Disk: 193GB VMware Virtual S, Graphics: VMware SVGA II, Audio: Ensoniq ES1371/ES1373, Network: Intel 82545EM + 4 x AMD 79c970

OS: Ubuntu 20.04, Kernel: 5.15.0-89-generic (x86_64), Desktop: GNOME Shell 3.36.9, Display Server: X Server 1.20.13, Display Driver: vmware 13.3.0, Compiler: GCC 9.4.0, File-System: ext4, Screen Resolution: 2558x1343, System Layer: VMware

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: CPU Microcode: 0xffffffff
Python Notes: Python 3.8.10
Security Notes: gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Mitigation of untrained return thunk; SMT disabled + spec_rstack_overflow: Mitigation of SMT disabled + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: disabled RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 4 December 2023 20:49 by user sping.